Construct: ORF TRCN0000465504
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001692.1_s317c1
- Derived from:
- ccsbBroadEn_03219
- DNA Barcode:
- CCTACGACCGATCGCTCAAAGTCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF706 (51123)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465504
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51123 | ZNF706 | zinc finger protein 706 | NM_001042510.1 | 100% | 100% | |
| 2 | human | 51123 | ZNF706 | zinc finger protein 706 | NM_001267708.1 | 100% | 100% | |
| 3 | human | 51123 | ZNF706 | zinc finger protein 706 | NM_001267709.1 | 100% | 100% | |
| 4 | human | 51123 | ZNF706 | zinc finger protein 706 | NM_016096.4 | 100% | 100% | |
| 5 | human | 51123 | ZNF706 | zinc finger protein 706 | XM_024447172.1 | 100% | 100% | |
| 6 | human | 51123 | ZNF706 | zinc finger protein 706 | XM_024447173.1 | 100% | 100% | |
| 7 | mouse | 68036 | Zfp706 | zinc finger protein 706 | NM_026521.4 | 97.3% | 100% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 142
- ORF end:
- 370
- ORF length:
- 228
- Sequence:
-
1 TCTCCTTGGA ATTTGCCCTT TTTGAGTTTG GATCTTGGTT CATTCTCAAG CCTCAGACAG 61 TGGTTCAAAG TTTTTTTCTT CCATTTCAGG TGTCGTGAGG CTAGCATCGA TTGATCAACA 121 AGTTTGTACA AAAAAGTTGG CATGGCTCGT GGACAGCAGA AAATTCAGTC TCAGCAGAAA 181 AATGCCAAAA AGCAAGCTGG ACAAAAGAAG AAACAAGGAC ATGACCAAAA GGCTGCTGCC 241 AAAGCTGCCT TAATATATAC CTGCACTGTC TGTAGGACAC AAATGCCAGA CCCTAAGACC 301 TTCAAGCAGC ACTTTGAGAG CAAGCATCCT AAGACTCCAC TTCCTCCAGA ATTAGCTGAT 361 GTTCAGGCAT ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC 421 CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG 481 ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACCTAC GACCGATCGC TCAAAGTCCA 541 CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg tgaaagatt