Construct: ORF TRCN0000465531
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009858.1_s317c1
- Derived from:
- ccsbBroadEn_16157
- DNA Barcode:
- TGACTCCTCTATTCTTTGGCACAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD13D (338692)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465531
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XM_011544988.2 | 71.6% | 71% | (many diffs) |
| 2 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | NM_001347901.2 | 47.9% | 48.1% | (many diffs) |
| 3 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XM_011544986.1 | 44.3% | 43.9% | (many diffs) |
| 4 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XM_011544987.2 | 44.3% | 43.9% | (many diffs) |
| 5 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | NM_207354.3 | 41.1% | 41.2% | (many diffs) |
| 6 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XM_011544985.1 | 38.4% | 38.1% | (many diffs) |
| 7 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XR_428913.2 | 35.6% | (many diffs) | |
| 8 | human | 338692 | ANKRD13D | ankyrin repeat domain 13D | XR_001747857.1 | 29.9% | (many diffs) | |
| 9 | mouse | 68423 | Ankrd13d | ankyrin repeat domain 13 fa... | NM_026720.2 | 35.1% | 37.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 831
- ORF length:
- 765
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc ctgtggtcgg ctgggcaggt tcaaggcaac actgtggctg agtgaagagc 121 acccgctctc cctgggtgac caggtgaccc ccatcatcga cctaatggcc atcagcaacg 181 ctcactttgc caagctgcgc gacttcatca ctctgcgcct tccacctggc ttccccgtca 241 aaattgagat tccccttttc cacgtgctca atgcccgcat caccttcagc aacctgtgtg 301 gctgtgatga gcccctgagc tccgtgtggg tgccggcccc cagctctgct gtcgccgcat 361 cagggaaccc tttcccgtgc gaggtggacc ccaccgtgtt tgaagtgccc aacgggtaca 421 gcgtgctggg catggagcgc aacgagcccc tccgggacga ggacgatgac cTCCTGCAGT 481 TCGCCATCCA GCAGAGCCTG CTTGAAGCGG GCACTGAGGC GGAGCAGGTG ACCGTCTGGG 541 AAGCCCTGAC CAACACCCGG CCCGGTGCCC GCCCTCCTCC CCAGGCCACG GTTTATGAGG 601 AACAGCTTCA GCTGGAGCGG GCCCTCCAGG AAAGCCTGCA GCTGTCCACA GAGCCCAGGG 661 GCCCAGGATC CCCTCCCAGG ACACCCCCAG CCCCCGGTCC ACCCAGCTTT GAAGAGCAGC 721 TGCGCCTGGC CCTGGAGTTG TCTTCACGGG AGCAGGAGGA GCGGGAGCGG CGCGGGCAGC 781 AGGAGGAGGA GGACTTACAG CGGATCCTGC AGCTGTCACT CACTGAGCAC TGCCCAACTT 841 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 901 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATTC 961 TTGTGGAAAG GACGATGACT CCTCTATTCT TTGGCACATA CGCGTTAAGT Cgacaatcaa 1021 cctctggatt acaaaatttg tgaaagatt