Construct: ORF TRCN0000465585

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003064.1_s317c1
Derived from:
ccsbBroadEn_12471
DNA Barcode:
AGAATCAACACGATTGCACTCCGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCLRE1C (64421)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465585
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519620.3 88.3% 88.7% (many diffs)
2 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519621.2 71.2% 70.5% (many diffs)
3 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350965.2 66.7% 64% (many diffs)
4 human 64421 DCLRE1C DNA cross-link repair 1C XR_930515.2 63.8% (many diffs)
5 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033855.3 59.3% 56.8% (many diffs)
6 human 64421 DCLRE1C DNA cross-link repair 1C XR_001747187.1 50.2% (many diffs)
7 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350966.2 48.2% 44.4% (many diffs)
8 human 64421 DCLRE1C DNA cross-link repair 1C XM_024448135.1 48.2% 44.4% (many diffs)
9 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350967.2 47.4% 44.5% (many diffs)
10 human 64421 DCLRE1C DNA cross-link repair 1C XR_001747185.2 46.7% (many diffs)
11 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289076.2 42.8% 39.4% (many diffs)
12 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289078.2 42.8% 39.4% (many diffs)
13 human 64421 DCLRE1C DNA cross-link repair 1C NM_022487.4 42.8% 39.4% (many diffs)
14 human 64421 DCLRE1C DNA cross-link repair 1C XM_006717491.4 42.8% 39.4% (many diffs)
15 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519616.1 42.8% 39.4% (many diffs)
16 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519617.1 42.8% 39.4% (many diffs)
17 human 64421 DCLRE1C DNA cross-link repair 1C XM_017016557.1 42.8% 39.4% (many diffs)
18 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033857.3 42.1% 39.5% (many diffs)
19 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033858.3 42.1% 39.5% (many diffs)
20 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289077.2 42.1% 39.5% (many diffs)
21 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289079.2 42.1% 39.5% (many diffs)
22 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519619.1 42.1% 39.5% (many diffs)
23 human 64421 DCLRE1C DNA cross-link repair 1C XM_017016558.1 42.1% 39.5% (many diffs)
24 human 64421 DCLRE1C DNA cross-link repair 1C XM_024448134.1 42.1% 39.5% (many diffs)
25 human 64421 DCLRE1C DNA cross-link repair 1C NR_146960.1 31.3% (many diffs)
26 human 64421 DCLRE1C DNA cross-link repair 1C NR_110297.2 19.7% (many diffs)
27 human 64421 DCLRE1C DNA cross-link repair 1C NR_146962.1 19.4% (many diffs)
28 human 64421 DCLRE1C DNA cross-link repair 1C NR_146961.2 19.3% (many diffs)
29 mouse 227525 Dclre1c DNA cross-link repair 1C XM_006497462.2 65.9% 67.9% (many diffs)
30 mouse 227525 Dclre1c DNA cross-link repair 1C NM_001302684.1 59.8% 58.8% (many diffs)
31 mouse 227525 Dclre1c DNA cross-link repair 1C XM_006497454.3 58% 57.1% (many diffs)
32 mouse 227525 Dclre1c DNA cross-link repair 1C XM_006497453.3 57.9% 57% (many diffs)
33 mouse 227525 Dclre1c DNA cross-link repair 1C NM_175683.4 56.9% 56% (many diffs)
34 mouse 227525 Dclre1c DNA cross-link repair 1C NM_146114.3 48.9% 48.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1368
ORF length:
1302
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag ttctttcgag gggcagatgg ccgagtatcc aactatctcc atagaccgct
121tcgataggga gaacctgagg gcccgcgcct acttcctgtc ccactgccac aaagatcaca
181tgaaaggatt aagagcccct accttgaaaa gaaggttgga gtgcagcttg aaggtttatc
241tatactgttc acctgtgact aaggagttgt tgttaacgag cccgaaatac agattttgga
301agaaacgaat tatatctatt gaaatcgaga ctcctaccca gatatcttta gtggatgaag
361catcaggaga gaaggaagag attgttgtga ctctcttacc agctggtcac tgtccgggat
421cagttatgtt tttatttcag ggcaataatg gaactgtcct gtacacagga gacttcagat
481tggcgcaagg agaagctgct agaatggagc ttctgcactc cgggggcaga gtcaaagaca
541tccaaagtgt atatttggat actacgttct gtgatccaag attttaccaa attccaagtc
601gggaggagtg tttaagtgga gtcttagagc tggtccgaag ctggatcact cggagcccgt
661accatgttgt gtggctgaac tgcaaagcgg cttatggcta tgaatatttg ttcaccaacc
721ttagtgaaga attaggagtc caggttcatg tgaataagct agacatgttt aggaacatgc
781ctgagatcct tcgtcatctc acaacagacc gcaacactca gatccatgca tgccggcatc
841ccaaggcaga ggaatatttt cagtggagca aattaccctg tggaattact tccagaaata
901gaattccact ccacataatc agcattaagc catccaccat gtggtttGGA GAAAGGAGCA
961GAAAAACAAA TGTAATTGTG AGGACTGGAG AGAGTTCATA CAGAGCTTGT TTTTCTTTTC
1021ACTCCTCCTA CAGTGAGATT AAAGATTTCT TGAGCTACCT CTGTCCTGTG AACGCATATC
1081CAAATGTCAT TCCAGTTGGC ACAACTATGG ATAAAGTTGT CGAAATCTTA AAGCCTTTAT
1141GCCGGTCTTC CCAAAGTACG GAGCCAAAGT ATAAACCACT GGGAAAACTG AAGAGAGCTA
1201GAACAGTTCA CCGAGACTCA GGGTCTCACT CTGTCACTCA GGCTAGAATG CGGTGGTGCC
1261ATCATGACTC CCTGTATCCT TTAACTCCTG GGATCAAGCG ATCTTCCTGC CTCAGCCTCC
1321TGACTAGCTG GATCACAGGT GCATACCGCC ATGCCCAGCT AATGATTTAC CCAACTTTCT
1381TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1441CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1501GTGGAAAGGA CGAAGAATCA ACACGATTGC ACTCCGAACG CGTTAAGTCg acaatcaacc
1561tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)