Construct: ORF TRCN0000465597

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000809.1_s317c1
Derived from:
ccsbBroadEn_11983
DNA Barcode:
CATACGACGACCCCTCAGTGATGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX7 (51375)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465597
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51375 SNX7 sorting nexin 7 NM_001364903.1 99.7% 99.7% 457T>C;1104G>A;1107A>G
2 human 51375 SNX7 sorting nexin 7 XM_011541564.3 99.7% 99.7% 457T>C;1104G>A;1107A>G
3 human 51375 SNX7 sorting nexin 7 XM_017001425.2 99.7% 99.7% 457T>C;1104G>A;1107A>G
4 human 51375 SNX7 sorting nexin 7 XM_017001426.2 99.7% 99.7% 457T>C;1104G>A;1107A>G
5 human 51375 SNX7 sorting nexin 7 XM_017001427.2 99.7% 99.7% 457T>C;1104G>A;1107A>G
6 human 51375 SNX7 sorting nexin 7 XM_017001428.1 86.5% 86.5% (many diffs)
7 human 51375 SNX7 sorting nexin 7 NM_015976.5 85.5% 85.5% (many diffs)
8 human 51375 SNX7 sorting nexin 7 NM_152238.4 73.3% 73.3% (many diffs)
9 human 51375 SNX7 sorting nexin 7 XM_006710677.2 70.8% 70.8% (many diffs)
10 human 51375 SNX7 sorting nexin 7 NR_033716.2 54.1% (many diffs)
11 mouse 76561 Snx7 sorting nexin 7 NM_029655.3 74.2% 79.3% (many diffs)
12 mouse 76561 Snx7 sorting nexin 7 NM_001190156.1 64.5% 69.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1227
ORF length:
1161
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61tcggcatgga catgaactcc ttcagcccta tgatgccaac atccccttta tcaatgataa
121accaaatcaa gtttgaggat gaaccagatt taaaggatct cttcatcaca gttgatgaac
181ctgaaagtca tgttactaca atagaaactt tcattacgta taggattatt actaagacat
241ctcgtgggga atttgactcc agtgaatttg aagttaggag acgatatcaa gatttccttt
301ggttgaaggg aaaactggaa gaagcacacc ccactctgat tattccacca ttgccagaaa
361agtttatagt aaaaggaatg gtggaacgct ttaacgatga cttcattgag acacgcagga
421aggctttaca taaatttttg aaccgaattg ctgatcatcc aactttaaca tttaatgaag
481acttcaaaat ttttctcact gcacaagctt gggaactctc tcctcacaag aagcaaggtc
541ctggcttgct aagcaggatg gggcaaaccg tcagagctgt tgcgtcctca atgagaggag
601ttaaaaaccg cccagaggag ttcatggaaa tgaataactt tattgaacta tttagccaga
661aaataaattt gatagataaa atatctcaga gaatttataa ggaagaaagg gaatattttg
721atgaaatgaa agaatatggc ccaattcata ttctgtggtc agcgtcagaa gaggatctgg
781ttgatactct aaaggatgtt gccagctgca ttgacagatg ctgtaaggcc actgaaaagc
841ggatgtctgg actcTCAGAG GCCCTGCTTC CTGTTGTACA TGAGTACGTG CTTTATAGTG
901AAATGTTAAT GGGTGTTATG AAAAGAAGAG ACCAAATACA AGCAGAACTG GATTCCAAAG
961TTGAAGTTTT GACCTATAAA AAGGCAGATA CTGATCTGCT TCCAGAGGAG ATTGGAAAAC
1021TTGAAGATAA AGTGGAATGT GCTAATAATG CCCTGAAAGC AGATTGGGAG AGATGGAAAC
1081AAAATATGCA AAATGATATC AAGTTAGCAT TTACAGATAT GGCTGAGGAG AATATCCATT
1141ATTATGAACA GTGCCTTGCT ACGTGGGAAT CGTTCCTTAC ATCACAGACC AACCTTCACT
1201TGGAAGAAGC CTCTGAAGAT AAACCTTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
1261GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1321AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACATACGAC
1381GACCCCTCAG TGATGGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1441aagatt

Download FASTA (ORF) (Full)