Construct: ORF TRCN0000465875

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008286.1_s317c1
Derived from:
ccsbBroadEn_12460
DNA Barcode:
TCTCCACTCTCTTGAGCCTGCTCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAJC1 (64215)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465875
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64215 DNAJC1 DnaJ heat shock protein fam... NM_022365.4 61.3% 61.1% 1_642del;1555C>T
2 human 64215 DNAJC1 DnaJ heat shock protein fam... XM_011519614.3 31.1% 28.1% (many diffs)
3 human 64215 DNAJC1 DnaJ heat shock protein fam... XM_017016536.2 23.9% 21.1% (many diffs)
4 mouse 13418 Dnajc1 DnaJ heat shock protein fam... XM_011238947.1 75.6% 69.7% (many diffs)
5 mouse 13418 Dnajc1 DnaJ heat shock protein fam... NM_001190817.1 52.9% 51.9% (many diffs)
6 mouse 13418 Dnajc1 DnaJ heat shock protein fam... NM_007869.3 52.9% 51.9% (many diffs)
7 mouse 13418 Dnajc1 DnaJ heat shock protein fam... XR_865923.2 28.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1086
ORF length:
1020
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa accacagtgg catgatttgc ttccatgcaa actggggatt tggttttgcc
121ttacactaaa agcattacct cacctcatcc aggatgctgg gcagttttat gctaaatata
181aagaaacaag attgaaggaa aaggaagatg cactgactag aactgaactt gaaacacttc
241aaaaacagaa gaaagttaaa aaaccaaaac ctgaatttcc tgtatacaca cctttagaaa
301ctacatatat tcagtcttat gatcatggaa cttccataga agaaattgag gaacaaatgg
361atgattggtt ggaaaacagg aaccgaacac agaaaaaaca ggcacctgaa tggacagaag
421aggacctcag ccaactgaca agaagtatgg ttaagttccc aggagggact ccaggtcgat
481gggaaaagat tgcccacgaa ttgggtcgat ctgtgacaga tgtgacaacc aaagccaagc
541aactgaagga ttcagtgacc tgctccccag gaatggttag actctccgaa ctcaaatcga
601cagttcagaa ttccaggccc atcaaaacgg ccaccacctt gcccgatgac atgatcaccc
661agcgagagga cgcagagggg gtggcagcgg aggaggagca ggagggagac tccggtgagc
721aggagaccgg ggccactgat gcccggcctc ggaggcggaa gccagccagg ctgctggagg
781ctacagcgaa gccggagcca gaggagaagt ccagagccaa gcggcagaag gactttgaca
841tagcagaaca aaacgagtcc agcgacgagg agagcctgag aaaagagaga gctcggtctg
901cagaggagcc gtggactcaa aatcaacaga aacttctgga actGGCGTTG CAGCAGTACC
961CAAGGGGATC CTCTGACTGC TGGGACAAAA TAGCCAGATG TGTCCCGTCC AAGAGCAAGG
1021AAGACTGTAT CGCTAGGTAC AAGTTGCTGG TTGAACTGGT CCAAAAGAAA AAACAAGCTA
1081AAAGCTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1141TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1201CTTGGCTTTA TATATCTTGT GGAAAGGACG ATCTCCACTC TCTTGAGCCT GCTCGACGCG
1261TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)