Construct: ORF TRCN0000465932
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006947.1_s317c1
- Derived from:
- ccsbBroadEn_15841
- DNA Barcode:
- GCCTATCAGACCGAAGTTGTCGTT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- IP6K2 (51447)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465932
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001005910.3 | 95.3% | 14.1% | 1_1delAinsATGAGCCCAGCCTT |
| 2 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001005911.3 | 95.3% | 14.1% | 1_1delAinsATGAGCCCAGCCTT |
| 3 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001146178.2 | 72.9% | 15.6% | (many diffs) |
| 4 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001146179.3 | 72.9% | 15.6% | (many diffs) |
| 5 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_011533822.1 | 72.9% | 15.6% | (many diffs) |
| 6 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_011533823.1 | 72.9% | 15.6% | (many diffs) |
| 7 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006591.1 | 63.8% | 9.1% | (many diffs) |
| 8 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006589.1 | 63.4% | 9% | (many diffs) |
| 9 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006590.2 | 63.4% | 9% | (many diffs) |
| 10 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006592.1 | 49.7% | 9.6% | (many diffs) |
| 11 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006593.1 | 49.7% | 9.6% | (many diffs) |
| 12 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006588.1 | 47.2% | 7.7% | (many diffs) |
| 13 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001190316.1 | 47% | 7.7% | (many diffs) |
| 14 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001190317.1 | 46.2% | 7.6% | (many diffs) |
| 15 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NR_027438.3 | 22.5% | (many diffs) | |
| 16 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NR_027437.3 | 22.4% | (many diffs) | |
| 17 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001005909.2 | 19.7% | 3.4% | (many diffs) |
| 18 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_016291.4 | 19.7% | 3.4% | (many diffs) |
| 19 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006583.2 | 19.7% | 3.4% | (many diffs) |
| 20 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006584.2 | 19.7% | 3.4% | (many diffs) |
| 21 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006585.2 | 19.7% | 3.4% | (many diffs) |
| 22 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_024453568.1 | 19.7% | 3.4% | (many diffs) |
| 23 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_024453569.1 | 19.7% | 3.4% | (many diffs) |
| 24 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_024453570.1 | 19.7% | 3.4% | (many diffs) |
| 25 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_024453571.1 | 19.7% | 3.4% | (many diffs) |
| 26 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_006713202.2 | 18.1% | 3% | (many diffs) |
| 27 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_011533816.2 | 18.1% | 3% | (many diffs) |
| 28 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_006713201.2 | 18.1% | 3% | (many diffs) |
| 29 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_006713200.1 | 18% | 3% | (many diffs) |
| 30 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_006713199.4 | 17.9% | 3% | (many diffs) |
| 31 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XR_001740172.1 | 17% | (many diffs) | |
| 32 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511856.3 | 84.4% | 14% | (many diffs) |
| 33 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511855.2 | 27.7% | 4.7% | (many diffs) |
| 34 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511853.2 | 24% | 4.1% | (many diffs) |
| 35 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511854.3 | 24% | 4.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 186
- ORF length:
- 120
- Sequence:
-
1 tcTTCCATTT CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG 61 TTGGCATGAG CCCAGCCTTT GAGCCCAGCC TTCAGGGCCA TGGATGTGGA GCCCCGCGCC 121 AAAGGCGTCC TTCTGGAGCC CTTTGTCCAC CAGGTCGGGG GGCACTCATG CGTGCTCCGC 181 TTCAATGAGA CAACCCTGTG CAAGCCCCTG GTCCCAAGGG AACATCAGTT CTACGAGACC 241 CTCCCTGCTG AGATGCGCAA ATTCACTCCC CAGTACAAAG GACAAAGCCA AAGGCCCCTT 301 GTTAGCTGGC CATCCCTGCC CCATTTTTTC CCCTGGTCCT TTCCCCTGTG GCCACAGGGA 361 AGTGTGGCCT GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC 421 CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG 481 ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGCCTA TCAGACCGAA GTTGTCGTTA 541 CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg tgaaagatt