Construct: ORF TRCN0000465949

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005682.1_s317c1
Derived from:
ccsbBroadEn_07361
DNA Barcode:
GCTCGAGCGTCCCAGCTTCGCACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTMR7 (9108)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465949
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9108 MTMR7 myotubularin related protein 7 NM_004686.5 99.7% 99.8% (many diffs)
2 human 9108 MTMR7 myotubularin related protein 7 XM_024447325.1 66.5% 66.5% 0_1ins663
3 human 9108 MTMR7 myotubularin related protein 7 XM_006716414.3 63.8% 63.1% (many diffs)
4 human 9108 MTMR7 myotubularin related protein 7 XM_011544693.2 63.8% 63.1% (many diffs)
5 human 9108 MTMR7 myotubularin related protein 7 XM_017013956.2 56.3% 56.2% 1_1delAins865
6 mouse 54384 Mtmr7 myotubularin related protein 7 NM_001040699.1 88.9% 94.5% (many diffs)
7 mouse 54384 Mtmr7 myotubularin related protein 7 XM_017312902.1 70.7% 75% (many diffs)
8 mouse 54384 Mtmr7 myotubularin related protein 7 XM_006509466.3 59.5% 63.3% (many diffs)
9 mouse 54384 Mtmr7 myotubularin related protein 7 XM_006509467.3 59.5% 63.3% (many diffs)
10 mouse 54384 Mtmr7 myotubularin related protein 7 XM_006509469.3 48.7% 52.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2049
ORF length:
1980
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggagcacatc cgcacgccca aggttgaaaa tgtccgcttg gtagatcgag
121tgtctcctaa aaaagcagct ctaggtactt tgtatttgac ggctacccat gtcatattcg
181tggaaaattc acctgacgca agaaaagaaa catggattct tcacagtcag atttccacca
241ttgagaaaca ggcaacaacc gctaccggat gccctctgct gattcgctgc aagaactttc
301agataataca gctcatcata cctcaggaaa gagattgcca cgacgtgtac atctccctga
361tacgccttgc aaggccagtg aaatatgagg agttatactg cttttcattc aaccccatgc
421tggataaaga agaaagagag caaggctggg tgctgatcga tcttagtgaa gaatacacgc
481ggatgggcct ccctaatcat tactggcagc tcagcgatgt gaatagagac tatagagtct
541gtgactctta tcctactgaa ctgtacgttc ccaaatcggc cacggcacac atcatagtgg
601ggagttccaa attccggagt agacggcgat ttcctgtcct ttcttactat tataaagata
661accacgcctc catctgccgg agcagccagc ccctgtccgg cttcagtgcc cggtgcctgg
721aggacgagca gatgctccag gccattagga aagccaatcc aggaagtgac ttcgtttatg
781tcgttgacac ccggcctaaa cttaatgcaa tggcaaatcg tgctgcaggg aaaggctatg
841agaatgaaga caattattcc aatatcaagt ttcagtttat cgggatagag aacatccatg
901tcatgaggaa cagtctgcag aaaatgctgg aagtgtgtga acttaaatct ccctccatga
961gtgatttcct gtggggtctg gagaactctg gctggttaag gcacattaaa gccataatgg
1021atgcaggaat cttcattgca aaggcagtgt cagaggaagg ggcaagtgtg cttgttcact
1081gttctgatgg ctgggacagg accgctcagg tgtgctcggt ggcaagcctg ctgctggacc
1141ctcactaccg gactctgaag ggcttcatgg tattaattga aaaggactgg atttcctttg
1201gtcataagtt taatcaccga tatggcaatc tagatggtga cccaaaagaa atctctccag
1261ttattgacca gttcattgag tgtgtttggc agttaatgga acaatttccc tgtgcctttg
1321agttcaatga gaggtttttg attcacattc aacatcacat ttattcctgc cagtttggaa
1381acttcctatg taacagccaa aaggagagac gagaactcaa gattcaagaa agaacatact
1441cattatgggc tcacctgtgg aagaatcggg ccgactacct gaatcctctg tttagagctg
1501atcacagcca gactcaggga acccttcatc tccctacaac accatgtaac ttcatgtaca
1561agttttggag tggaatgtat aaccgctttg aaaaggggat gcagccccga cagtcagtta
1621cagattacct aatggcagtg aaggaagaaa ctcagcagct agaggaagaa ctagaggccc
1681tggaagaaag gctggaaaaa attcaaaagg tccagttaaa ttgcactaag gtgaagagta
1741agcaaagtga gcccagcaag cactcagggt tttctaccTC AGACAACAGC ATAGCCAACA
1801CTCCCCAGGA TTACAGTGGG AATATGAAAT CATTTCCATC CCGGAGCCCT TCACAAGGCG
1861ATGAAGATTC TGCTCTGATT CTAACCCAAG ACAATCTGAA AAGTTCAGAT CCAGATCTGT
1921CAGCCAACAG TGACCAAGAG TCCGGGGTGG AGGATTTGAG CTGTCGGTCT CCAAGTGGTG
1981GTGAGCATGC ACCGAGTGAA GATAGTGGCA AGGACCGGGA TTCTGATGAA GCCGTGTTTC
2041TCACTGCCTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
2101CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
2161TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGCTCGA GCGTCCCAGC TTCGCACCAC
2221GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)