Construct: ORF TRCN0000465949
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005682.1_s317c1
- Derived from:
- ccsbBroadEn_07361
- DNA Barcode:
- GCTCGAGCGTCCCAGCTTCGCACC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MTMR7 (9108)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465949
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9108 | MTMR7 | myotubularin related protein 7 | NM_004686.5 | 99.7% | 99.8% | (many diffs) |
| 2 | human | 9108 | MTMR7 | myotubularin related protein 7 | XM_024447325.1 | 66.5% | 66.5% | 0_1ins663 |
| 3 | human | 9108 | MTMR7 | myotubularin related protein 7 | XM_006716414.3 | 63.8% | 63.1% | (many diffs) |
| 4 | human | 9108 | MTMR7 | myotubularin related protein 7 | XM_011544693.2 | 63.8% | 63.1% | (many diffs) |
| 5 | human | 9108 | MTMR7 | myotubularin related protein 7 | XM_017013956.2 | 56.3% | 56.2% | 1_1delAins865 |
| 6 | mouse | 54384 | Mtmr7 | myotubularin related protein 7 | NM_001040699.1 | 88.9% | 94.5% | (many diffs) |
| 7 | mouse | 54384 | Mtmr7 | myotubularin related protein 7 | XM_017312902.1 | 70.7% | 75% | (many diffs) |
| 8 | mouse | 54384 | Mtmr7 | myotubularin related protein 7 | XM_006509466.3 | 59.5% | 63.3% | (many diffs) |
| 9 | mouse | 54384 | Mtmr7 | myotubularin related protein 7 | XM_006509467.3 | 59.5% | 63.3% | (many diffs) |
| 10 | mouse | 54384 | Mtmr7 | myotubularin related protein 7 | XM_006509469.3 | 48.7% | 52.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2049
- ORF length:
- 1980
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagcacatc cgcacgccca aggttgaaaa tgtccgcttg gtagatcgag 121 tgtctcctaa aaaagcagct ctaggtactt tgtatttgac ggctacccat gtcatattcg 181 tggaaaattc acctgacgca agaaaagaaa catggattct tcacagtcag atttccacca 241 ttgagaaaca ggcaacaacc gctaccggat gccctctgct gattcgctgc aagaactttc 301 agataataca gctcatcata cctcaggaaa gagattgcca cgacgtgtac atctccctga 361 tacgccttgc aaggccagtg aaatatgagg agttatactg cttttcattc aaccccatgc 421 tggataaaga agaaagagag caaggctggg tgctgatcga tcttagtgaa gaatacacgc 481 ggatgggcct ccctaatcat tactggcagc tcagcgatgt gaatagagac tatagagtct 541 gtgactctta tcctactgaa ctgtacgttc ccaaatcggc cacggcacac atcatagtgg 601 ggagttccaa attccggagt agacggcgat ttcctgtcct ttcttactat tataaagata 661 accacgcctc catctgccgg agcagccagc ccctgtccgg cttcagtgcc cggtgcctgg 721 aggacgagca gatgctccag gccattagga aagccaatcc aggaagtgac ttcgtttatg 781 tcgttgacac ccggcctaaa cttaatgcaa tggcaaatcg tgctgcaggg aaaggctatg 841 agaatgaaga caattattcc aatatcaagt ttcagtttat cgggatagag aacatccatg 901 tcatgaggaa cagtctgcag aaaatgctgg aagtgtgtga acttaaatct ccctccatga 961 gtgatttcct gtggggtctg gagaactctg gctggttaag gcacattaaa gccataatgg 1021 atgcaggaat cttcattgca aaggcagtgt cagaggaagg ggcaagtgtg cttgttcact 1081 gttctgatgg ctgggacagg accgctcagg tgtgctcggt ggcaagcctg ctgctggacc 1141 ctcactaccg gactctgaag ggcttcatgg tattaattga aaaggactgg atttcctttg 1201 gtcataagtt taatcaccga tatggcaatc tagatggtga cccaaaagaa atctctccag 1261 ttattgacca gttcattgag tgtgtttggc agttaatgga acaatttccc tgtgcctttg 1321 agttcaatga gaggtttttg attcacattc aacatcacat ttattcctgc cagtttggaa 1381 acttcctatg taacagccaa aaggagagac gagaactcaa gattcaagaa agaacatact 1441 cattatgggc tcacctgtgg aagaatcggg ccgactacct gaatcctctg tttagagctg 1501 atcacagcca gactcaggga acccttcatc tccctacaac accatgtaac ttcatgtaca 1561 agttttggag tggaatgtat aaccgctttg aaaaggggat gcagccccga cagtcagtta 1621 cagattacct aatggcagtg aaggaagaaa ctcagcagct agaggaagaa ctagaggccc 1681 tggaagaaag gctggaaaaa attcaaaagg tccagttaaa ttgcactaag gtgaagagta 1741 agcaaagtga gcccagcaag cactcagggt tttctaccTC AGACAACAGC ATAGCCAACA 1801 CTCCCCAGGA TTACAGTGGG AATATGAAAT CATTTCCATC CCGGAGCCCT TCACAAGGCG 1861 ATGAAGATTC TGCTCTGATT CTAACCCAAG ACAATCTGAA AAGTTCAGAT CCAGATCTGT 1921 CAGCCAACAG TGACCAAGAG TCCGGGGTGG AGGATTTGAG CTGTCGGTCT CCAAGTGGTG 1981 GTGAGCATGC ACCGAGTGAA GATAGTGGCA AGGACCGGGA TTCTGATGAA GCCGTGTTTC 2041 TCACTGCCTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 2101 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 2161 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGCTCGA GCGTCCCAGC TTCGCACCAC 2221 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt