Construct: ORF TRCN0000465982
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007642.1_s317c1
- Derived from:
- BRDN0000394866
- DNA Barcode:
- TTTTGGTTGACGGAGATATTCTGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IWS1 (55677)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465982
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | NM_017969.3 | 99.7% | 99.6% | 176_178delGCCinsAAT;1694_1695delTCinsAG |
| 2 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XM_005263707.3 | 98.4% | 97.4% | (many diffs) |
| 3 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XM_017004467.2 | 97.2% | 96.9% | (many diffs) |
| 4 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XM_006712626.3 | 95.8% | 94.8% | (many diffs) |
| 5 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XM_011511450.1 | 87.5% | 84.8% | (many diffs) |
| 6 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_922960.2 | 83.5% | (many diffs) | |
| 7 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738826.2 | 81.9% | (many diffs) | |
| 8 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738830.1 | 80.6% | (many diffs) | |
| 9 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738831.1 | 80.2% | (many diffs) | |
| 10 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738827.1 | 79.9% | (many diffs) | |
| 11 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738833.2 | 79% | (many diffs) | |
| 12 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738834.2 | 78.7% | (many diffs) | |
| 13 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738829.2 | 78.4% | (many diffs) | |
| 14 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738828.1 | 77.6% | (many diffs) | |
| 15 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XR_001738832.1 | 76.5% | (many diffs) | |
| 16 | human | 55677 | IWS1 | interacts with SUPT6H, CTD ... | XM_017004468.2 | 74.6% | 74.6% | 0_1ins621;1073_1074delTCinsAG |
| 17 | mouse | 73473 | Iws1 | IWS1, SUPT6 interacting pro... | NM_173441.3 | 82.3% | 83.9% | (many diffs) |
| 18 | mouse | 73473 | Iws1 | IWS1, SUPT6 interacting pro... | XM_006526292.3 | 82.1% | 83.6% | (many diffs) |
| 19 | mouse | 73473 | Iws1 | IWS1, SUPT6 interacting pro... | XM_006526291.3 | 80.1% | 81.3% | (many diffs) |
| 20 | mouse | 73473 | Iws1 | IWS1, SUPT6 interacting pro... | XR_386017.2 | 20.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2526
- ORF length:
- 2457
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggactcggaa tattacagcg gcgaccagtc agatgatggt ggtgctaccc 121 cagtacagga tgaacgggat tcagggtcag acggtgagga tgatgtaaat gagcaacact 181 ccggatcaga cactggaagt gtagaacgtc attcagagaa tgaaactagt gatcgagaag 241 atgaattccc caaaggacat catgtgacag actctgagaa cgatgagccc ttaaatctta 301 atgctagtga ctctgaaagt gaggagcttc acaggcaaaa ggacagcgac tctgaatctg 361 aggaacgtgc agagcctcct gcaagcgatt ctgaaaatga ggatgtcaat cagcatggga 421 gcgactctga gagtgaagag accaggaaat tacctggtag tgactctgaa aatgaggaac 481 ttcttaatgg gcatgcaagt gactcagaaa acgaagatgt tgggaagcat cccgccagtg 541 attctgagat tgaggagctc cagaagagtc ctgctagtga ctctgaaaca gaagatgctc 601 taaaacctca aatcagtgac tctgagagtg aggaaccccc aaggcaccaa gccagtgact 661 ccgaaaatga ggagcctccc aaacctcgaa tgagtgattc tgaaagtgag gagcttccta 721 aacctcaggt cagtgattca gaaagtgagg aacccccaag gcaccaggcc agtgactctg 781 aaaatgagga gcttcccaaa cctcgtatca gtgactcaga aagtgaggac cctccgaggc 841 accaggccag tgactcagaa aatgaagagc ttcccaaacc ccgaatcagt gattcggaaa 901 gtgaggatcc cccaaggaac caggccagtg attcggaaaa tgaggagcta cccaaacccc 961 gagtcagtga ctctgagagt gaggggcctc agaaggggcc tgccagtgac tcagaaactg 1021 aggatgcgtc cagacacaaa cagaagccag agtcagatga tgacagcgac agggagaata 1081 agggagagga tacagaaatg cagaatgact ccttccattc agacagccat atggacagaa 1141 aaaagtttca cagttctgat agtgaggagg aagaacacaa aaagcaaaaa atggacagtg 1201 atgaagatga aaaagagggt gaggaggaga aagtagcgaa gagaaaagct gctgtgcttt 1261 ctgatagtga agatgaagag aaagcatcag caaagaagag tcgtgttgtc tctgatgcag 1321 atgactctga cagtgatgct gtatcagaca agtcaggcaa aagagagaag accatagcat 1381 ctgacagtga ggaagaagct gggaaagaat tgtctgataa gaaaaatgaa gagaaggatc 1441 tgtttgggag tgacagtgag tcaggcaatg aagaagaaaa tcttattgca gacatatttg 1501 gagaatctgg tgatgaagag gaagaagaat ttacaggttt taaccaagaa gatctggaag 1561 aagaaaaagg tgaaacacag gtaaaagaag cagaagattc agattctgat gataacataa 1621 agagaggaaa acatatggac tttctgtcag attttgagat gatgttgcag cgaaaaaaga 1681 gcatgagtgg caagcgcaga cggaaccgcg atggtggcac ctttattagt gatgcagacg 1741 acgtcgtgag tgccatgatc gagaagatga atgaagctgc tgaggaagac agacagttga 1801 acaatcaaaa aaagccagca ctgaaaaaat taactttact gcctgctgta gttatgcacc 1861 ttaagaagca ggaccttaaa gaaacattca ttgacagtgg tgtgatgtct gccatcaaag 1921 aatggctctc acctctacca gataggagtt tgcctgcact caagatccgg gaggagctgc 1981 tgaagatcct gcaagagctg cctagtgtga gccaggagac cctgaagcat agtgggattg 2041 gacgagcagt gatgtatctc tataaacacc ccaaggagtc aaggtctaac aaggacatgg 2101 cagggaaatt aatcaatgag tggtctaggc ctatatttgg tcttacctca aactacaaag 2161 gaatgacaag agaagaaagg gagcagagag atctagaaca gatgccTCAA CGACGAAGAA 2221 TGAACAGCAC TGGTGGTCAG ACACCCAGAA GAGACCTGGA AAAGGTGCTG ACAGGAGAGG 2281 AGAAGGCTCT TAGACCTGGA GATCCTGGAT TCTGTGCCCG TGCAAGGGTC CCAATGCCTT 2341 CAAACAAGGA CTATGTTGTC AGGCCCAAAT GGAATGTGGA AATGGAGTCA TCCAGGTTTC 2401 AGGCGACCTC CAAGAAGGGT ATCAGTCGAC TGGATAAACA GATGAGAAAG TTCACAGATA 2461 TAAGGAAAAA AAGCAGATCT GCACACGCAG TGAAAATCAG CATTGAGGGC AACAAAATGC 2521 CATTGTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 2581 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 2641 CTTGGCTTTA TATATCTTGT GGAAAGGACG ATTTTGGTTG ACGGAGATAT TCTGTACGCG 2701 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt