Construct: ORF TRCN0000466000

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005935.1_s317c1
Derived from:
ccsbBroadEn_06052
DNA Barcode:
TAACGGGGAACGTTCGTTGATAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSHL1 (1444)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466000
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1444 CSHL1 chorionic somatomammotropin... NM_001318.4 99.4% 99.2% 135C>T;141C>A
2 human 1444 CSHL1 chorionic somatomammotropin... NM_022580.3 91.6% 91.3% 1_33del;168C>T;174C>A
3 human 1444 CSHL1 chorionic somatomammotropin... NM_001321068.2 79.5% 79.3% 1_96del;231C>T;237C>A
4 human 1444 CSHL1 chorionic somatomammotropin... NM_001321067.2 78.6% 78.3% 1_102del;237C>T;243C>A
5 human 1444 CSHL1 chorionic somatomammotropin... NM_001321069.2 69.5% 69.3% 1_165del;300C>T;306C>A
6 human 2688 GH1 growth hormone 1 NM_022560.4 64.7% 57.6% (many diffs)
7 human 1444 CSHL1 chorionic somatomammotropin... NM_022581.3 63.9% 63.8% 1_213del;348C>T;354C>A
8 human 2688 GH1 growth hormone 1 NM_022559.4 57.7% 52.9% (many diffs)
9 human 1444 CSHL1 chorionic somatomammotropin... NM_022579.3 57.3% 57.2% 1_282del;417C>T;423C>A
10 human 2689 GH2 growth hormone 2 NM_022556.4 56.9% 49% (many diffs)
11 human 1442 CSH1 chorionic somatomammotropin... NM_001317.6 56.6% 54.3% (many diffs)
12 human 1443 CSH2 chorionic somatomammotropin... NM_020991.3 56.2% 54.3% (many diffs)
13 human 2688 GH1 growth hormone 1 NM_000515.5 53.7% 49.3% (many diffs)
14 human 2689 GH2 growth hormone 2 NM_002059.5 52.9% 45.6% (many diffs)
15 human 2689 GH2 growth hormone 2 NM_022558.4 46.2% 20.9% (many diffs)
16 human 1443 CSH2 chorionic somatomammotropin... NM_022644.3 30.3% 27.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
453
ORF length:
384
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaggaaacg cagcagaaat ccaacttaga gctgctccac atctcccTGC
121TGCTCATCGA GTCGCGGCTG GAGCCCGTGC GGTTCCTCAG GAGTACCTTC ACCAACAACC
181TGGTGTATGA CACCTCGGAC AGTGATGAAT ATCACCTCCT AAAGGACCTA GAGGAAGGCA
241TCCAAATGCT GATGGGGAGG CTGGAAGACG GCAGCCACCT GACTGGGCAG ACCCTCAAGC
301AGACCTACAG CAAGTTTGAC ACAAACTCGC ACAACCATGA CGCACTGCTC AAGAACTACG
361GGCTGCTCCA CTGCTTCAGG AAGGACATGG ACAAGGTCGA GACATTCCTG CGCATGGTGC
421AGTGCCGCTC TGTGGAGGGC AGCTGTGGCT TCTTGCCAAC TTTCTTGTAC AAAGTGGTTG
481ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
541GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATA
601ACGGGGAACG TTCGTTGATA ATACGCGTTA AGTCgacaat caacctctgg attacaaaat
661ttgtgaaaga tt

Download FASTA (ORF) (Full)