Construct: ORF TRCN0000466009

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014642.1_s317c1
Derived from:
ccsbBroadEn_01928
DNA Barcode:
CCAACGCTTTGACCTTTGCAGGAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NCK2 (8440)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466009
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8440 NCK2 NCK adaptor protein 2 NM_001004720.3 100% 100%
2 human 8440 NCK2 NCK adaptor protein 2 NM_003581.5 100% 100%
3 human 8440 NCK2 NCK adaptor protein 2 XM_006712797.3 100% 100%
4 human 8440 NCK2 NCK adaptor protein 2 XM_011511991.3 100% 100%
5 human 8440 NCK2 NCK adaptor protein 2 XM_017005103.1 100% 100%
6 human 8440 NCK2 NCK adaptor protein 2 XM_017005104.1 100% 100%
7 human 8440 NCK2 NCK adaptor protein 2 XM_017005105.1 100% 100%
8 human 8440 NCK2 NCK adaptor protein 2 NM_001004722.3 21.1% 20% (many diffs)
9 human 8440 NCK2 NCK adaptor protein 2 XM_011511992.2 21.1% 20% (many diffs)
10 mouse 17974 Nck2 non-catalytic region of tyr... NM_010879.3 88.5% 96% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1206
ORF length:
1140
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac agaagaagtt attgtgatag ccaagtggga ctacaccgcc cagcaggacc
121aggagctgga catcaagaag aacgagcggc tgtggttgct ggacgactcc aagacgtggt
181ggcgggtgag gaacgcggcc aacaggacgg gctatgtacc gtccaactac gtggagcgga
241agaacagcct gaagaagggc tccctcgtga agaacctgaa ggacacacta ggcctcggca
301agacgcgcag gaagaccagc gcgcgggatg cgtcccccac gcccagcacg gacgccgagt
361accccgccaa tggcagcggc gccgaccgca tctacgacct caacatcccg gccttcgtca
421agttcgccta tgtggccgag cgggaggatg agttgtccct ggtgaagggg tcgcgcgtca
481ccgtcatgga gaagtgcagc gacggttggt ggcggggcag ctacaacggg cagatcggct
541ggttcccctc caactacgtc ttggaggagg tggacgaggc ggctgcggag tccccaagct
601tcctgagcct gcgcaagggc gcctcgctga gcaatggcca gggctcccgc gtgctgcatg
661tggtccagac gctgtacccc ttcagctcag tcaccgagga ggagctcaac ttcgagaagg
721gggagaccat ggaggtgatt gagaagccgg agaacgaccc cgagtggtgg aaatgcaaaa
781atgcccgggg ccaggtgggc ctcgtcccca aaaactacgt ggtggtcctc agtgacgggc
841ctgccctgca ccctgcgcac gccccacaga taagctacac cgggcccTCG TCCAGCGGGC
901GCTTCGCGGG CAGAGAGTGG TACTACGGGA ACGTGACGCG GCACCAGGCC GAGTGCGCCC
961TCAACGAGCG GGGCGTGGAG GGCGACTTCC TCATTAGGGA CAGCGAGTCC TCGCCCAGCG
1021ACTTCTCCGT GTCCCTTAAA GCGTCAGGGA AGAACAAACA CTTCAAGGTG CAGCTCGTGG
1081ACAATGTCTA CTGCATTGGG CAGCGGCGCT TCCACACCAT GGACGAGCTG GTGGAACACT
1141ACAAAAAGGC GCCCATCTTC ACCAGCGAGC ACGGGGAGAA GCTCTACCTC GTCAGGGCCC
1201TGCAGTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1261TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1321CTTGGCTTTA TATATCTTGT GGAAAGGACG ACCAACGCTT TGACCTTTGC AGGAGACGCG
1381TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)