Construct: ORF TRCN0000466020
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005222.1_s317c1
- Derived from:
- ccsbBroadEn_16062
- DNA Barcode:
- ACTGTCAGATTCACTGTCAACTTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDKN2AIPNL (91368)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466020
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91368 | CDKN2AIPNL | CDKN2A interacting protein ... | XM_011543709.2 | 74.1% | 72.9% | (many diffs) |
| 2 | human | 91368 | CDKN2AIPNL | CDKN2A interacting protein ... | NM_080656.3 | 71.9% | 68.9% | (many diffs) |
| 3 | mouse | 52626 | Cdkn2aipnl | CDKN2A interacting protein ... | NM_029976.3 | 61.7% | 66.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 345
- ORF length:
- 255
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGTCGGTGG CGAGGCGGCT GCCGCAGTGG 121 AGGAGCTGGT TTCGGGGGTG CGGCAGGCGG CCGACTTCGC GGAGCAGTTC CGCTCCTACT 181 CAGAGAGCGA GAAGCAATGG AAGGCCCGCA TGGAATTCAT CCTGCGCCAC CTGCCCGACT 241 ACCGCGACCC GCCCGACGGC AGTGGCCGCC TGGACCAGCT GCTCTCCCTC TCCATGGTCT 301 GGGCCAACCA TCTCTTCCTA GGCTGCAGCC CACGGGGTCC TAAGTACCCA ACTTTCTTGT 361 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 421 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 481 GAAAGGACGA ACTGTCAGAT TCACTGTCAA CTTCACGCGT TAAGTCgaca atcaacctct 541 ggattacaaa atttgtgaaa gatt