Construct: ORF TRCN0000466052

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002473.1_s317c1
Derived from:
ccsbBroadEn_08158
DNA Barcode:
CCCAGCGAGCTATTGCCCAGAAGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNPO2 (30000)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466052
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 30000 TNPO2 transportin 2 NM_001136195.2 100% 100%
2 human 30000 TNPO2 transportin 2 NM_013433.5 100% 100%
3 human 30000 TNPO2 transportin 2 NM_001136196.2 98.8% 98.8% 2303_2332del
4 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_011248342.2 91.6% 99.6% (many diffs)
5 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_011248345.2 91.6% 99.6% (many diffs)
6 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_017312647.1 91.6% 99.6% (many diffs)
7 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_017312648.1 91.6% 99.6% (many diffs)
8 mouse 212999 Tnpo2 transportin 2 (importin 3, ... NM_001122843.1 90.6% 98.5% (many diffs)
9 mouse 212999 Tnpo2 transportin 2 (importin 3, ... NM_145390.4 90.6% 98.5% (many diffs)
10 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_011248343.2 90.6% 98.5% (many diffs)
11 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_011248344.2 90.6% 98.5% (many diffs)
12 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_017312649.1 78.7% 85.9% (many diffs)
13 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_017312650.1 78.7% 85.9% (many diffs)
14 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XM_011248346.2 77.8% 84.9% (many diffs)
15 mouse 212999 Tnpo2 transportin 2 (importin 3, ... XR_878792.2 38.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2727
ORF length:
2661
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ctggcagcca gacgagcagg gcctgcagca ggtcctgcag ctgctcaaag
121actcacagtc gcccaacaca gccactcagc gcatcgtgca ggataaactc aaacaactca
181atcagtttcc tgacttcaac aactacctga ttttcgtcct gaccagactc aagtcagaag
241atgagccaac gcgctctctc agtggcctca tcctcaagaa caacgtgaag gcacactatc
301agagcttccc accccctgtg gcagacttca tcaaacagga gtgtctcaac aacattggcg
361atgcctcctc gctcatccga gccaccattg gcattctcat caccaccatc gcttccaagg
421gtgagctgca gatgtggccc gagctgctgc cccagctctg caacctgctt aactcggagg
481attacaacac ttgtgaggga gcctttggag ccctgcagaa gatctgtgaa gactcatcag
541agcttctgga cagtgacgcc ctcaacaggc ccctcaacat catgatcccc aagttcctgc
601agttcttcaa gcactgcagt cccaagatcc ggtcccacgc catcgcctgc gtgaaccagt
661tcatcatgga ccgggcccag gcgctgatgg acaatattga caccttcatc gagcacctat
721ttgccctggc tgtggatgat gaccccgagg tgcggaagaa tgtgtgccgt gccctggtga
781tgcttctgga agtgcggatt gacaggctca tcccccacat gcacagcatc atccagtaca
841tgctgcagag gacccaggac catgatgaga acgttgccct tgaggcctgt gagttctggc
901tgacgctggc cgagcagccc atctgcaagg aagtcctggc ctcccatctg gtccagttga
961tccccatctt ggtgaatggg atgaagtact cggaaattga catcatcctg ctcaaggggg
1021atgtggagga ggatgaggct gtccccgaca gtgagcagga catcaagcca cgcttccaca
1081agtcacgcac ggtcacactg ccccacgagg ctgagcggcc tgatggctcc gaggacgcgg
1141aggatgacga tgatgatgat gctctgtccg actggaattt gaggaagtgc tcagcggctg
1201cactggacgt cctcgccaat gtcttccggg aggaactgct gccccaccta ctcccactac
1261tcaaaggcct cctcttccac cccgagtggg tggtcaagga gtcgggcatc ctggtgctgg
1321gcgccattgc tgagggctgc atgcagggca tggtgcccta cctgcctgag ctgatcccgc
1381acctgatcca gtgcctgtcg gataagaagg ccttggtccg ctccatcgcc tgctggacgc
1441tgagccgcta tgcccactgg gtggtcagcc agccacccga catgcacctc aagcccctga
1501tgacagagct gctcaaacgc atcctggatg gcaacaagag ggtacaggag gcggcctgca
1561gtgcttttgc caccctggag gaagaggcct gcacggagct ggtgccctac ctcagctaca
1621tcctggacac ccttgtcttt gcctttggga aataccagca caagaacctg ctcatcctct
1681atgacgccat tggcaccctg gccgactctg taggccacca cctcaaccag ccggaataca
1741tccagaagct gatgccccca ctgatccaga agtggaatga gctcaaggac gaagacaagg
1801acctcttccc cctgctggag tgtctgtcat cggtggccac cgccctgcag agtggcttcc
1861tgccttactg tgagcccgtc taccagcgct gtgtcaccct ggtgcagaag acactggctc
1921aggccatgat gtacacccag caccctgagc agtatgaggc tcccgacaag gacttcatga
1981tcgtagcact ggatctgctc agcggcctgg ccgagggcct gggtggtcac gtggagcagc
2041tggtggcccg cagcaacatc atgacattgc tgttccagtg catgcaggac tcgatgcctg
2101aggtccggca gagctccttt gccctcctgg gagacctcac caaagcctgc ttcatccatg
2161tcaagccctg tatcgccgag ttcatgccca ttctgggcac caacctgaac ccagagttca
2221tctccgtctg caacaacgcc acctgggcca ttggtgaaat ctgcatgcag atgggggcag
2281agatgcagcc ttatgtgcag atggtcctca acaacctggt ggaaatcatt aaccgaccca
2341acacacccaa gacactgctg gaaaacacag ccatcaccat cggccgcttg ggctacgtgt
2401gcccccagga ggtggcaccc atgctgcagc agttcatccg gccttggtgc acgtcccTCA
2461GGAACATCAG GGACAACGAG GAGAAGGACT CAGCCTTCCG CGGCATCTGC ATGATGATCG
2521GTGTCAACCC GGGGGGCGTT GTGCAGGACT TTATTTTCTT CTGCGATGCT GTAGCCTCCT
2581GGGTGAGCCC GAAGGATGAC CTTCGGGACA TGTTTTATAA GATTCTCCAC GGCTTCAAAG
2641ACCAAGTTGG GGAAGATAAC TGGCAGCAGT TCTCTGAGCA ATTCCCGCCG CTGCTCAAGG
2701AGAGGCTGGC GGCTTTCTAT GGGGTCTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
2761GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
2821AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACCCAGCGA
2881GCTATTGCCC AGAAGAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
2941aagatt

Download FASTA (ORF) (Full)