Transcript: Mouse XR_878792.2

PREDICTED: Mus musculus transportin 2 (importin 3, karyopherin beta 2b) (Tnpo2), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tnpo2 (212999)
Length:
6365
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_878792.2
NBCI Gene record:
Tnpo2 (212999)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_878792.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000305761 TGATCCCTATCCTCGTGAATG pLKO_005 2258 3UTR 100% 10.800 8.640 N Tnpo2 n/a
2 TRCN0000305825 GCTCAACTCAGAGGATTATAA pLKO_005 1767 3UTR 100% 15.000 10.500 N Tnpo2 n/a
3 TRCN0000305762 AGGAGTCAGTGGGACCTAAAT pLKO_005 4416 3UTR 100% 13.200 9.240 N Tnpo2 n/a
4 TRCN0000070165 CCAGTGCCTGTCAGATAAGAA pLKO.1 2688 3UTR 100% 5.625 3.938 N Tnpo2 n/a
5 TRCN0000324596 CCAGTGCCTGTCAGATAAGAA pLKO_005 2688 3UTR 100% 5.625 3.938 N Tnpo2 n/a
6 TRCN0000070164 CCTTTGGCAAATACCAGCATA pLKO.1 2942 3UTR 100% 4.950 3.465 N Tnpo2 n/a
7 TRCN0000070167 GCACAGCATCATCCAGTACAT pLKO.1 2121 3UTR 100% 4.950 3.465 N Tnpo2 n/a
8 TRCN0000324597 GCACAGCATCATCCAGTACAT pLKO_005 2121 3UTR 100% 4.950 3.465 N Tnpo2 n/a
9 TRCN0000070163 GAACGTGGAGACCACCAGGTT pLKO.1 4313 3UTR 100% 0.880 0.616 N Tnpo2 n/a
10 TRCN0000070166 GCAACAGTTCTCAGAGCAGTT pLKO.1 4244 3UTR 100% 4.050 2.430 N Tnpo2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_878792.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000466052 CCCAGCGAGCTATTGCCCAGAAGA pLX_317 10.4% 38.3% V5 (many diffs) n/a
2 ccsbBroadEn_08158 pDONR223 100% 38.3% None (many diffs) n/a
3 ccsbBroad304_08158 pLX_304 0% 38.3% V5 (many diffs) n/a
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