Construct: ORF TRCN0000466267

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004159.1_s317c1
Derived from:
ccsbBroadEn_01426
DNA Barcode:
GAATAATCCGTTCCGCGCGCTTAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MRPL23 (6150)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466267
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6150 MRPL23 mitochondrial ribosomal pro... NM_021134.4 100% 100%
2 human 107987373 LOC107987373 39S ribosomal protein L23, ... XM_006724896.2 99.7% 99.3% 364A>G
3 human 6150 MRPL23 mitochondrial ribosomal pro... XM_006718271.2 75.3% 64.1% (many diffs)
4 human 6150 MRPL23 mitochondrial ribosomal pro... XM_011520276.3 68.2% 53.9% (many diffs)
5 human 107987373 LOC107987373 39S ribosomal protein L23, ... XM_017030111.1 68.2% 53.9% (many diffs)
6 human 6150 MRPL23 mitochondrial ribosomal pro... XM_011520275.2 57.6% 44.5% (many diffs)
7 human 6150 MRPL23 mitochondrial ribosomal pro... XM_011520273.1 56% 43.3% (many diffs)
8 mouse 19935 Mrpl23 mitochondrial ribosomal pro... NM_011288.1 76.9% 84.5% (many diffs)
9 mouse 19935 Mrpl23 mitochondrial ribosomal pro... XM_006508517.2 74.4% 81.2% (many diffs)
10 mouse 19935 Mrpl23 mitochondrial ribosomal pro... XM_006508516.3 73.8% 81.2% (many diffs)
11 mouse 19935 Mrpl23 mitochondrial ribosomal pro... XM_017322050.1 66.5% 69.3% (many diffs)
12 mouse 19935 Mrpl23 mitochondrial ribosomal pro... XM_006508518.3 54.7% 59.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
525
ORF length:
459
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gcggaatgtg gtgtaccccc tgtaccggct gggtggccca caacttcggg
121tgttccgaac caacttcttc attcagctgg tgcggcccgg tgtggcccag cccgaggaca
181ccgtgcagtt ccggatcccc atggaaatga caagggtgga cctcaggaaT TACCTCGAGG
241GCATCTATAA CGTGCCCGTG GCTGCTGTGC GGACACGGGT GCAGCATGGC TCTAACAAGA
301GAAGAGATCA CAGAAACGTG AGGATCAAGA AGCCGGACTA CAAGGTCGCC TACGTGCAGC
361TGGCCCATGG ACAGACCTTC ACGTTCCCAG ATCTGTTTCC CGAGAAAGAC GAGAGCCCTG
421AAGGCAGCGC TGCCGACGAC CTCTACAGCA TGCTCGAGGA GGAGAGGCAG CAGAGGCAGA
481GCAGCGACCC GCGGCGGGGC GGCGTCCCCA GCTGGTTCGG GCTGTGCCCA ACTTTCTTGT
541ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
601AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
661GAAAGGACGA GAATAATCCG TTCCGCGCGC TTATACGCGT TAAGTCgaca atcaacctct
721ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)