Construct: ORF TRCN0000466594
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007617.1_s317c1
- Derived from:
- ccsbBroadEn_12440
- DNA Barcode:
- ATTCCAGTTGGGATTATAACAGCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RBM26 (64062)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466594
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535195.1 | 8.2% | 2.1% | 1_1783del;1967_2211del |
| 2 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_022118.5 | 6.2% | 1.6% | 1_2521del;2705_2940del |
| 3 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535193.3 | 6.2% | 1.6% | 1_2521del;2705_2940del |
| 4 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001286632.1 | 6.2% | 1.5% | 1_2530del;2714_2949del |
| 5 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535192.3 | 6.2% | 1.5% | 1_2530del;2714_2949del |
| 6 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020700.2 | 6.2% | 1.5% | 1_2521del;2705_2949del |
| 7 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020698.2 | 6.1% | 1.5% | 1_2530del;2714_2958del |
| 8 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020699.2 | 6.1% | 1.5% | 1_2545del;2729_2964del |
| 9 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020694.2 | 6.1% | 1.5% | 1_2560del;2744_2979del |
| 10 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020695.2 | 6.1% | 1.5% | 1_2551del;2735_2979del |
| 11 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020697.2 | 6.1% | 1.5% | 1_2632del;2816_2982del |
| 12 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535191.3 | 6.1% | 1.5% | 1_2566del;2750_2985del |
| 13 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020696.2 | 6.1% | 1.5% | 1_2560del;2744_2988del |
| 14 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535190.2 | 6.1% | 1.5% | 1_2566del;2750_2994del |
| 15 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020693.2 | 6.1% | 1.5% | 1_2575del;2759_2994del |
| 16 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_006719857.2 | 6.1% | 1.5% | 1_2647del;2831_2997del |
| 17 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_005266497.2 | 6.1% | 1.5% | 1_2647del;2831_3000del |
| 18 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535189.2 | 6% | 1.5% | 1_2575del;2759_3003del |
| 19 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020692.2 | 6% | 1.5% | 1_2593del;2777_3012del |
| 20 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001366735.2 | 6% | 1.5% | 1_2602del;2786_3021del |
| 21 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535188.3 | 6% | 1.5% | 1_2602del;2786_3021del |
| 22 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001286631.1 | 6% | 1.5% | 1_2608del;2792_3027del |
| 23 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535187.3 | 6% | 1.5% | 1_2608del;2792_3027del |
| 24 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535186.3 | 6% | 1.5% | 1_2602del;2786_3030del |
| 25 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535185.3 | 6% | 1.5% | 1_2617del;2801_3036del |
| 26 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020691.2 | 6% | 1.5% | 1_2623del;2807_3042del |
| 27 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535184.2 | 6% | 1.5% | 1_2617del;2801_3045del |
| 28 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020689.2 | 5.9% | 1.5% | 1_2623del;2807_3051del |
| 29 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020690.2 | 5.9% | 1.5% | 1_2632del;2816_3051del |
| 30 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535183.3 | 5.9% | 1.5% | 1_2638del;2822_3057del |
| 31 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535182.2 | 5.9% | 1.5% | 1_2632del;2816_3060del |
| 32 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_005266491.5 | 5.9% | 1.5% | 1_2647del;2831_3066del |
| 33 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535180.3 | 5.9% | 1.5% | 1_2647del;2831_3066del |
| 34 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535181.2 | 5.9% | 1.5% | 1_2638del;2822_3066del |
| 35 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020688.2 | 5.9% | 1.5% | 1_2647del;2831_3066del |
| 36 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_024449393.1 | 5.9% | 1.5% | 1_2647del;2831_3066del |
| 37 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535179.2 | 5.9% | 1.5% | 1_2647del;2831_3075del |
| 38 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020703.2 | 5.4% | 1.5% | (many diffs) |
| 39 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020701.2 | 5.3% | 1.5% | (many diffs) |
| 40 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020702.2 | 5.3% | 1.5% | (many diffs) |
| 41 | mouse | 74213 | Rbm26 | RNA binding motif protein 26 | NM_134077.4 | 5.4% | 1.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 273
- ORF length:
- 183
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGCCGAGGC AGGGGGCGAG GGCGAGGGCG 121 AGGTGTGCCT GGTCATGCTG TGGTGGATCA CCGTCCCAGG GCATTGGAGA TTTCTGCATT 181 TACGGAGAGC GATAGAGAAG ATCTTCTTCC TCATTTTGCG CAATATGGTG AAATTGAAGA 241 TTGTCAGATT GATGATTCCT CACTTCATGC AGTACCCAAC TTTCTTGTAC AAAGTGGTTG 301 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 361 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAT 421 TCCAGTTGGG ATTATAACAG CGACGCGTTA AGTCgacaat caacctctgg attacaaaat 481 ttgtgaaaga tt