Construct: ORF TRCN0000466638
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015479.1_s317c1
- Derived from:
- ccsbBroadEn_06263
- DNA Barcode:
- CCGTTGTCGCAGGTAGGATGGTGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GBP1 (2633)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466638
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2633 | GBP1 | guanylate binding protein 1 | NM_002053.3 | 99.8% | 99.6% | 1046C>G;1226C>G |
| 2 | human | 2635 | GBP3 | guanylate binding protein 3 | NM_018284.3 | 90.3% | 85.9% | (many diffs) |
| 3 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_006710574.3 | 86.6% | 82.5% | (many diffs) |
| 4 | human | 2635 | GBP3 | guanylate binding protein 3 | NM_001319181.1 | 82.8% | 79.5% | (many diffs) |
| 5 | human | 2635 | GBP3 | guanylate binding protein 3 | NM_001319179.1 | 77.9% | 73.7% | (many diffs) |
| 6 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_005270743.2 | 77.9% | 73.7% | (many diffs) |
| 7 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_011541233.1 | 77.9% | 73.7% | (many diffs) |
| 8 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_011541234.2 | 77.5% | 73.1% | (many diffs) |
| 9 | human | 2633 | GBP1 | guanylate binding protein 1 | XM_024446351.1 | 76.7% | 75.8% | (many diffs) |
| 10 | human | 2635 | GBP3 | guanylate binding protein 3 | NM_001319180.1 | 69.1% | 64.3% | (many diffs) |
| 11 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_017001013.1 | 69.1% | 64.3% | (many diffs) |
| 12 | human | 2635 | GBP3 | guanylate binding protein 3 | XM_017001014.1 | 56.4% | 51.5% | (many diffs) |
| 13 | human | 2635 | GBP3 | guanylate binding protein 3 | NR_135007.1 | 37.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1842
- ORF length:
- 1776
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc atcagagatc cacatgacag gcccaatgtg cctcattgag aacactaatg 121 ggcgactgat ggcgaatcca gaagctctga agatcctttc tgccattaca cagcctatgg 181 tggtggtggc aattgtgggc ctctaccgca caggcaaatc ctacctgatg aacaagctgg 241 ctggaaagaa aaagggcttc tctctgggct ccacggtgca gtctcacact aaaggaatct 301 ggatgtggtg tgtgccccac cccaagaagc caggccacat cctagttctg ctggacaccg 361 agggtctggg agatgtagag aagggtgaca accagaatga ctcctggatc ttcgccctgg 421 ccgtcctcct gagcagcacc ttcgtgtaca atagcatagg aaccatcaac cagcaggcta 481 tggaccaact gtactatgtg acagagctga cacatagaat ccgatcaaaa tcctcacctg 541 atgagaatga gaatgaggtt gaggattcag ctgactttgt gagcttcttc ccagactttg 601 tgtggacact gagagatttc tccctggact tggaagcaga tggacaaccc ctcacaccag 661 atgagtacct gacatactcc ctgaagctga agaaaggtac cagtcaaaaa gatgaaactt 721 ttaacctgcc cagactctgt atccggaaat tcttcccaaa gaaaaaatgc tttgtctttg 781 atcggcccgt tcaccgcagg aagcttgccc agctcgagaa actacaagat gaagagctgg 841 accccgaatt tgtgcaacaa gtagcagact tctgttccta catctttagt aattccaaaa 901 ctaaaactct ttcaggaggc atccaggtca acgggcctcg tctagagagc ctggtgctga 961 cctacgtcaa tgccatcagc agtggggatc tgccgtgcat ggagaacgca gtcctggcct 1021 tggcccagat agagaactca gctgcagtgc aaaaggctat tgcccactat gaacagcaga 1081 tgggccagaa ggtgcagctg cccacagaaa gcctccagga gctgctggac ctgcacaggg 1141 acagtgagag agaggccatt gaagtcttca tcaggagttc cttcaaagat gtggaccatc 1201 tatttcaaaa ggagttagcg gcccagctag aaaaaaagcg ggatgacttt tgtaaacaga 1261 atcaggaagc atcatcagat cgttgctcag gtttacttca ggtcattttc agtcctctag 1321 aagaagaagt gaaggcggga atttattcga aaccaggggg ctatcgtctc tttgttcaga 1381 agctacaaga ccTGAAGAAA AAGTACTATG AGGAACCGAG GAAGGGGATA CAGGCTGAAG 1441 AGATTCTGCA GACATACTTG AAATCCAAGG AGTCTATGAC TGATGCAATT CTCCAGACAG 1501 ACCAGACTCT CACAGAAAAA GAAAAGGAGA TTGAAGTGGA ACGTGTGAAA GCTGAGTCTG 1561 CACAGGCTTC AGCAAAAATG TTGCAGGAAA TGCAAAGAAA GAATGAGCAG ATGATGGAAC 1621 AGAAGGAGAG GAGTTATCAG GAACACTTGA AACAACTGAC TGAGAAGATG GAGAACGACA 1681 GGGTCCAGTT GCTGAAAGAG CAAGAGAGGA CCCTCGCTCT TAAACTTCAG GAACAGGAGC 1741 AACTACTAAA AGAGGGATTT CAAAAAGAAA GCAGAATAAT GAAAAATGAG ATACAGGATC 1801 TCCAGACGAA AATGAGACGA CGAAAGGCAT GTACCATAAG CTACCCAACT TTCTTGTACA 1861 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1921 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1981 AGGACGACCG TTGTCGCAGG TAGGATGGTG TACGCGTTAA GTCgacaatc aacctctgga 2041 ttacaaaatt tgtgaaagat t