Construct: ORF TRCN0000466707

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017871.1_s317c1
Derived from:
ccsbBroadEn_12366
DNA Barcode:
CGTGTCACTGTCCATGGGCTACTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SIPA1L2 (57568)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466707
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57568 SIPA1L2 signal induced proliferatio... XM_017001897.2 31.1% 31.1% 1_3516del;3964A>G;5100C>T
2 human 57568 SIPA1L2 signal induced proliferatio... XM_017001898.2 31.1% 31.1% 1_3516del;3964A>G;5100C>T
3 human 57568 SIPA1L2 signal induced proliferatio... NM_020808.4 30.8% 30.8% (many diffs)
4 human 57568 SIPA1L2 signal induced proliferatio... XM_005273211.2 30.8% 30.8% (many diffs)
5 human 57568 SIPA1L2 signal induced proliferatio... XM_005273212.4 30.8% 30.8% (many diffs)
6 human 57568 SIPA1L2 signal induced proliferatio... XM_005273213.4 30.8% 30.8% (many diffs)
7 human 57568 SIPA1L2 signal induced proliferatio... XM_011544243.2 30.8% 30.8% (many diffs)
8 human 57568 SIPA1L2 signal induced proliferatio... XM_017001896.1 30.8% 30.8% (many diffs)
9 mouse 244668 Sipa1l2 signal-induced proliferatio... XM_006531025.1 26.3% 27.9% (many diffs)
10 mouse 244668 Sipa1l2 signal-induced proliferatio... NM_001081337.1 26% 27.6% (many diffs)
11 mouse 244668 Sipa1l2 signal-induced proliferatio... XM_006531024.1 26% 27.6% (many diffs)
12 mouse 244668 Sipa1l2 signal-induced proliferatio... XM_011248389.1 23.9% 25.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1662
ORF length:
1596
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga agcaagcagg cacccggaaa ccaaatggca tggcccacct tccaaagtcc
121tgggttccta taaagaaaga gctctgcaga aagatggaag ttgcaaagat tcccccaata
181agctttctca cattggggat aaaagttgct ccagtcactc cagcagcaac acgctctcca
241gcaacacctc cagcaacagt gacgacaagc actttgggtc tggcgacctg atggaccccg
301aattactggg gctgacctac atcaaagggg cctccaccga cagtggcatc gacacggccc
361cctgcatgcc tgccaccatc ctcggccctg tgcacctggc aggcagcagg tccctgatcc
421acagccgggc cgagcagtgg gctgatgctg ccgacgtctc tgggcctgac gacgagccag
481ccaagttata ttctgtgcat ggctacgcgt ccgccatctc cgccggcagt gctgcggaag
541gcagcatggg cgatctcagt gagatatcct ctcattccag tggttctcac cattcaggaa
601gcccttcagc tcactgttca aaaagtagtg ggtctctgga ttcatccaaa gtctacatcg
661tgtctcacag cagcggacaa caggttcccg ggtccatgtc caagccctac cacagacaag
721gggcagtgaa caaatatgtc atcggctgga agaaatcgga gggcagccca ccgcccgagg
781agcctgaagt gactgaatgt cccgggatgt atagtgagat ggatgtcatg tccacagcaa
841ctcagcatca gacagtggtg ggagatgctg ttgcagagac tcaacatgtt ctgtctaaag
901aagattttct gaaattgatg cttcctgaca gccccttagt ggaggagggg cgaagaaagt
961tttcgttcta tgggaacctg tctccaagga ggtcgcttta ccgcacgctg tctgacgaga
1021gcatctgcag caacaggagg gggtcctcct ttggcagttc ccggagttcc gtgcttgacc
1081aggccctgcc caacgacatt ctgttcagca ccaccccacc ctaccacagc acgctgcctc
1141cgcgggccca ccccgcaccc agcatgggga gcctgagaaa tgagttctgg ttctccgatg
1201ggtccttatc agataagtcc aagtgcgcag atcctggcct gatgccccTC CCGGACACAG
1261CCACAGGGTT AGATTGGACC CACCTCGTGG ATGCTGCACG GGCATTTGAA GACCAGAGGG
1321TGGCATCCTT CTGCACCCTG ACAGATATGC AGCATGGGCA GGACCTGGAA GGGGCCCAAG
1381AGCTGCCCTT ATGTGTAGAT CCAGGCAGTG GCAAAGAGTT CATGGACACA ACTGGGGAGC
1441GTTCTCCATC ACCACTGACC GGGAAAGTCA ATCAGCTGGA ATTAATTCTT CGACAACTCC
1501AGACCGACCT TCGGAAGGAA AAACAAGACA AGGCCGTTCT CCAAGCAGAA GTGCAGCACC
1561TGAGACAGGA CAACATGAGA CTGCAGGAGG AGTCCCAGAC CGCGACAGCT CAGCTGCGGA
1621AATTCACAGA ATGGTTTTTC ACCACCATTG ACAAAAAATC TTACCCAACT TTCTTGTACA
1681AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
1741AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
1801AGGACGACGT GTCACTGTCC ATGGGCTACT CACGCGTTAA GTCgacaatc aacctctgga
1861ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)