Construct: ORF TRCN0000466800

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009562.1_s317c1
Derived from:
ccsbBroadEn_04223
DNA Barcode:
CTACGCCTAACAATAGCTAGTCAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LIMD2 (80774)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466800
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80774 LIMD2 LIM domain containing 2 NM_030576.4 100% 100%
2 human 80774 LIMD2 LIM domain containing 2 XM_005257703.1 100% 100%
3 human 80774 LIMD2 LIM domain containing 2 XM_005257705.4 100% 100%
4 human 80774 LIMD2 LIM domain containing 2 XM_006722124.2 100% 100%
5 mouse 67803 Limd2 LIM domain containing 2 NM_172397.3 89% 95.3% (many diffs)
6 mouse 67803 Limd2 LIM domain containing 2 XM_006534019.3 89% 95.3% (many diffs)
7 mouse 67803 Limd2 LIM domain containing 2 XM_006534020.3 89% 95.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
447
ORF length:
381
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt ccaggctgca ggagccgccc aggccacccc ctctcatgac gccaaaggcg
121gcggcagcag cacggtgcag cgctccaagt ccttcagcct gcgggcccag gtgaaggaga
181ccTGCGCCGC CTGCCAGAAG ACCGTGTACC CCATGGAGCG GCTGGTGGCC GACAAGCTCA
241TTTTCCACAA CTCTTGCTTC TGCTGCAAGC ACTGTCACAC CAAGCTCAGC CTGGGCAGCT
301ACGCCGCGCT GCACGGGGAG TTCTACTGCA AACCCCACTT CCAGCAGCTG TTTAAGAGCA
361AAGGCAACTA CGACGAGGGG TTTGGCCGCA AGCAGCACAA GGAGCTCTGG GCCCACAAGG
421AGGTGGACCC CGGCACCAAG ACGGCCTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
481GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
541AACTTGAAAG TATTTCGATT TCTTGGCTTT AATATCTTGT GGAAAGGACG ACTACGCCTA
601ACAATAGCTA GTCAGACGCG TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa
661agatt

Download FASTA (ORF) (Full)