Construct: ORF TRCN0000467006
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002568.1_s317c1
- Derived from:
- ccsbBroadEn_13613
- DNA Barcode:
- AACACAACTGCTTAACGTGATTGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SERINC2 (347735)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467006
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 347735 | SERINC2 | serine incorporator 2 | NM_001199039.2 | 26.1% | 26.1% | 1_885del;924_925insCAG |
| 2 | human | 347735 | SERINC2 | serine incorporator 2 | NM_178865.5 | 23% | 23% | 1_1050del;1089_1090insCAG |
| 3 | human | 347735 | SERINC2 | serine incorporator 2 | NM_001199037.1 | 22.8% | 22.8% | 1_1062del;1101_1102insCAG |
| 4 | human | 347735 | SERINC2 | serine incorporator 2 | NM_018565.3 | 22.8% | 22.8% | 1_1062del;1101_1102insCAG |
| 5 | human | 347735 | SERINC2 | serine incorporator 2 | NM_001199038.2 | 22.5% | 22.5% | 1_1077del;1116_1117insCAG |
| 6 | mouse | 230779 | Serinc2 | serine incorporator 2 | NM_001253386.1 | 22.5% | 22.8% | (many diffs) |
| 7 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_006503064.3 | 22.5% | 22.8% | (many diffs) |
| 8 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_006503065.3 | 22.5% | 22.8% | (many diffs) |
| 9 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_006503066.1 | 22.5% | 22.8% | (many diffs) |
| 10 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_017320158.1 | 22.5% | 22.8% | (many diffs) |
| 11 | mouse | 230779 | Serinc2 | serine incorporator 2 | NM_172702.3 | 19.7% | 20% | (many diffs) |
| 12 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_006503063.1 | 19.4% | 19.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 408
- ORF length:
- 318
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGCAGACCGA GGAGTGCCCA CCTATGCTAG 121 ACGCCACACA GCAGCAGCAG CAGCAGGTGG CAGCCTGTGA GGGCCGGGCC TTTGACAACG 181 AGCAGGACGG CGTCACCTAC AGCTACTCCT TCTTCCACTT CTGCCTGGTG CTGGCCTCAC 241 TGCACGTCAT GATGACGCTC ACCAACTGGT ACAAGCCCGG TGAGACCCGG AAGATGATCA 301 GCACGTGGAC CGCCGTGTGG GTGAAGATCT GTGCCAGCTG GGCAGGGCTG CTCCTCTACC 361 TGTGGACCCT GGTAGCCCCA CTCCTCCTGC GCAACCGCGA CTTCAGCTGC CCAACTTTCT 421 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 481 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 541 GTGGAAAGGA CGAAACACAA CTGCTTAACG TGATTGCACG CGTTAAGTCg acaatcaacc 601 tctggattac aaaatttgtg aaagatt