Construct: ORF TRCN0000467084

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003900.1_s317c1
Derived from:
ccsbBroadEn_11894
DNA Barcode:
ACCGATTTAAGGTTGATTACTGGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZC3H7A (29066)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467084
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29066 ZC3H7A zinc finger CCCH-type conta... XM_024450243.1 28.7% 28.7% 1_1239del
2 human 29066 ZC3H7A zinc finger CCCH-type conta... XM_011522464.2 22.8% 22.8% 1_1695del
3 human 29066 ZC3H7A zinc finger CCCH-type conta... XM_017023174.1 19.1% 19.1% 1_2109del
4 human 29066 ZC3H7A zinc finger CCCH-type conta... NM_014153.4 17.1% 17.1% 1_2412del
5 human 29066 ZC3H7A zinc finger CCCH-type conta... XM_006720877.2 17.1% 17.1% 1_2412del
6 human 29066 ZC3H7A zinc finger CCCH-type conta... XM_011522463.2 17.1% 17.1% 1_2412del
7 human 29066 ZC3H7A zinc finger CCCH-type conta... XR_932825.1 13.5% 1_2475del;2977_3705del
8 mouse 106205 Zc3h7a zinc finger CCCH type conta... XM_017316843.1 25.4% 24.6% (many diffs)
9 mouse 106205 Zc3h7a zinc finger CCCH type conta... NM_145931.2 15.1% 14.7% (many diffs)
10 mouse 106205 Zc3h7a zinc finger CCCH type conta... XM_006521664.2 15.1% 14.7% (many diffs)
11 mouse 106205 Zc3h7a zinc finger CCCH type conta... XM_006521665.2 15.1% 14.7% (many diffs)
12 mouse 106205 Zc3h7a zinc finger CCCH type conta... XM_006521666.1 15.1% 14.7% (many diffs)
13 mouse 106205 Zc3h7a zinc finger CCCH type conta... NR_027502.1 11.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
567
ORF length:
501
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa ggagaatggg atacaagata tggagcaatt ttacgaacta tggctcaaga
121gtcaaaaaaa tgaaaaaagt gaagacatag ccagtcagtc aaacaaggaa aatggaaaac
181aaattcacat gccaacagat tatgctgaag ttacagtgga ctttcactgc tGGATGTGTG
241GGAAAAACTG CAACAGTGAG AAGCAGTGGC AGGGCCACAT CTCCTCCGAG AAGCACAAAG
301AGAAGGTTTT CCACACCGAG GACGACCAGT ACTGCTGGCA GCACCGCTTC CCAACAGGCT
361ATTTCAGTAT TTGTGATAGG TATATGAATG GCACCTGCCC AGAAGGAAAC AGCTGTAAAT
421TTGCACATGG AAATGCCGAA CTTCATGAAT GGGAAGAAAG AAGAGATGCC CTAAAGATGA
481AGCTCAACAA AGCACGAAAA GATCACTTAA TTGGCCCAAA TGATAATGAC TTTGGAAAAT
541ATAGTTTTTT GTTTAAAGAT TTAAACTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
601GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
661AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAACCGATTT
721AAGGTTGATT ACTGGGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
781aagatt

Download FASTA (ORF) (Full)