Construct: ORF TRCN0000467121
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005816.1_s317c1
- Derived from:
- ccsbBroadEn_12469
- DNA Barcode:
- TACAGAGCGCGACATTTACCCTTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARAP3 (64411)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467121
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_011537677.2 | 5.4% | 1.1% | 1_3346del;3569_4047del |
| 2 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_005268499.1 | 5% | 1% | 1_3697del;3920_4398del |
| 3 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_006714792.2 | 5% | 1% | 1_3718del;3941_4419del |
| 4 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_005268498.2 | 4.8% | 1% | 1_3871del;4094_4572del |
| 5 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | NM_022481.6 | 4.7% | 1% | 1_3931del;4154_4632del |
| 6 | human | 64411 | ARAP3 | ArfGAP with RhoGAP domain, ... | XM_005268497.2 | 4.6% | 1% | (many diffs) |
| 7 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | NM_001205336.1 | 4.6% | 1.2% | (many diffs) |
| 8 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525491.3 | 4.6% | 1.2% | (many diffs) |
| 9 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525492.3 | 4.6% | 1.2% | (many diffs) |
| 10 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | NM_139206.2 | 4.4% | 1.2% | (many diffs) |
| 11 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525489.1 | 4.4% | 1.2% | (many diffs) |
| 12 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525486.1 | 4.4% | 1.2% | (many diffs) |
| 13 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525487.3 | 4.4% | 1.2% | (many diffs) |
| 14 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525488.2 | 4.4% | 1.2% | (many diffs) |
| 15 | mouse | 106952 | Arap3 | ArfGAP with RhoGAP domain, ... | XM_006525490.1 | 4.2% | 1.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 156
- ORF end:
- 378
- ORF length:
- 222
- Sequence:
-
1 GCACTTGATG TAATTCTCCT TGGAATTTGC CCTTTTTGAG TTTGGATCTT GGTTCATTCT 61 CAAGCCTCAG ACAGTGGTTC AAAGTTTTTT TCTTCCATTT CAGGTGTCGT GAGGCTAGCA 121 TCGATTGATC AACAAGTTTG TACAAAAAAG TTGGCATGAA ATGTGGGATT GGACCACCAG 181 CATCCTTAAA GCCCAGCACG ATGACCAGCA GCCAGTGGTC TTACGACGCC ATTCCTCCTC 241 TGACCTTGCC CGTCAGAAGT TTGGCACTAT GCCTTTGCTG CCTATCCGTG GGGATGACAG 301 TGGAGCCACC CTCCTCTCTG CCAATCAGAC CCTGCGGCGA CTACACAACC GGAGGACCCT 361 GTCCATGTTC TTTCCAATGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 421 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 481 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATACAGAG CGCGACATTT 541 ACCCTTAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt