Construct: ORF TRCN0000467264
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011982.1_s317c1
- Derived from:
- ccsbBroadEn_08276
- DNA Barcode:
- CCGTACCATTAAGGCTAAAAATGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC25A37 (51312)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467264
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51312 | SLC25A37 | solute carrier family 25 me... | NM_016612.4 | 99.9% | 100% | 348G>A |
| 2 | human | 51312 | SLC25A37 | solute carrier family 25 me... | XM_011544550.2 | 80.3% | 79.2% | (many diffs) |
| 3 | human | 51312 | SLC25A37 | solute carrier family 25 me... | NM_001317813.2 | 78.5% | 78.6% | 0_1ins216;132G>A |
| 4 | human | 51312 | SLC25A37 | solute carrier family 25 me... | NM_001317814.2 | 78.5% | 78.6% | 0_1ins216;132G>A |
| 5 | human | 51312 | SLC25A37 | solute carrier family 25 me... | XM_006716352.3 | 78.5% | 78.6% | 0_1ins216;132G>A |
| 6 | human | 51312 | SLC25A37 | solute carrier family 25 me... | XM_011544553.2 | 78.5% | 78.6% | 0_1ins216;132G>A |
| 7 | human | 51312 | SLC25A37 | solute carrier family 25 me... | XM_017013532.1 | 78.5% | 78.6% | 0_1ins216;132G>A |
| 8 | human | 51312 | SLC25A37 | solute carrier family 25 me... | NM_001317812.2 | 55.3% | 55.3% | 0_1ins453 |
| 9 | human | 51312 | SLC25A37 | solute carrier family 25 me... | XM_011544554.2 | 55.3% | 55.3% | 0_1ins453 |
| 10 | mouse | 67712 | Slc25a37 | solute carrier family 25, m... | NM_026331.3 | 88.3% | 92% | (many diffs) |
| 11 | mouse | 67712 | Slc25a37 | solute carrier family 25, m... | XM_006519461.1 | 57.1% | 54.9% | (many diffs) |
| 12 | mouse | 100862085 | Gm16867 | predicted gene, 16867 | XM_011245299.2 | 16.6% | 15.8% | (many diffs) |
| 13 | mouse | 100862085 | Gm16867 | predicted gene, 16867 | XM_011245301.1 | 16.5% | 14.9% | (many diffs) |
| 14 | mouse | 100862085 | Gm16867 | predicted gene, 16867 | XM_011245300.1 | 15.8% | 15.1% | (many diffs) |
| 15 | mouse | 100862085 | Gm16867 | predicted gene, 16867 | XM_011245302.1 | 14.8% | 14.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1083
- ORF length:
- 1014
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagctgcgc agcgggagcg tgggcagcca ggcggtggcg cggaggatgg 121 atggggacag ccgagatggc ggcggcggca aggacgccac cgggtcggag gactacgaga 181 acctgccgac tagcgcctcc gtgtccaccc acatgacagc aggagcgatg gccgggatcc 241 tggagcactc ggtcatgtac ccggtggact cggtgaagac acgaatgcag agtttgagtc 301 cagatcccaa agcccagtac acaagtatct acggagccct caagaaaatc atgcggaccg 361 aaggcttctg gaggcccttg cgaggcgtca acgtcatgat catgggtgca gggccagccc 421 atgccatgta ttttgcctgc tatgaaaaca tgaaaaggac tttaaatgac gttttccacc 481 accaaggaaa cagccaccta gccaacggga tagctgggag tatggccacc ctgctccacg 541 atgcggtaat gaatccagca gaagtggtga agcagcgctt gcagatgtac aactcgcagc 601 accggtcagc aatcagctgc atccggacgg tgtggaggac cgaggggttg ggggccttct 661 accggagcta caccacgcag ctgaccatga acatcccctt ccagtccatc cacTTCATCA 721 CCTATGAGTT CCTGCAGGAG CAGGTCAACC CCCACCGGAC CTACAACCCG CAGTCCCACA 781 TCATCTCAGG CGGGCTGGCC GGGGCCCTCG CCGCGGCCGC CACGACCCCC CTGGACGTCT 841 GTAAGACCCT TCTGAACACT CAGGAGAACG TGGCCCTCTC GCTGGCCAAC ATCAGCGGCC 901 GGCTGTCGGG TATGGCCAAT GCCTTCCGGA CGGTGTACCA GCTCAACGGC CTGGCCGGCT 961 ACTTCAAAGG CATCCAGGCG CGTGTCATCT ACCAGATGCC CTCCACCGCC ATTTCTTGGT 1021 CTGTCTATGA GTTCTTCAAG TACTTTCTCA CCAAGCGCCA GCTGGAAAAT CGAGCTCCAT 1081 ACTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 1141 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 1201 GGCTTTATAT ATCTTGTGGA AAGGACGACC GTACCATTAA GGCTAAAAAT GAACGCGTTA 1261 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt