Transcript: Mouse XM_006519461.1

PREDICTED: Mus musculus solute carrier family 25, member 37 (Slc25a37), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc25a37 (67712)
Length:
4540
CDS:
883..1554

Additional Resources:

NCBI RefSeq record:
XM_006519461.1
NBCI Gene record:
Slc25a37 (67712)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006519461.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313525 AGATCCCAAAGCCCGGTATAC pLKO_005 260 5UTR 100% 10.800 15.120 N Slc25a37 n/a
2 TRCN0000313454 GCCATCTCCTGGTCCGTTTAT pLKO_005 1477 CDS 100% 13.200 10.560 N Slc25a37 n/a
3 TRCN0000313455 GTGCTTGTGTGTGTCTATAAA pLKO_005 1974 3UTR 100% 15.000 10.500 N Slc25a37 n/a
4 TRCN0000313453 GGAAACAGCCATCTAGCTAAT pLKO_005 444 5UTR 100% 10.800 7.560 N Slc25a37 n/a
5 TRCN0000068411 CTTCAAGTACATCCTTACAAA pLKO.1 1503 CDS 100% 5.625 3.938 N Slc25a37 n/a
6 TRCN0000068410 GCCCGGTATACAAGCATCTAT pLKO.1 270 5UTR 100% 5.625 3.938 N Slc25a37 n/a
7 TRCN0000068412 CTTCCAGTCAATTCACTTCAT pLKO.1 1167 CDS 100% 4.950 3.465 N Slc25a37 n/a
8 TRCN0000068408 GCAGTAATGAATCCAGCAGAA pLKO.1 1012 CDS 100% 4.050 2.835 N Slc25a37 n/a
9 TRCN0000317139 GCAGTAATGAATCCAGCAGAA pLKO_005 1012 CDS 100% 4.050 2.835 N Slc25a37 n/a
10 TRCN0000068409 GCTGGAGAATCGAACTCTGTA pLKO.1 1530 CDS 100% 4.950 2.970 N Slc25a37 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006519461.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08276 pDONR223 100% 57.1% 54.9% None (many diffs) n/a
2 ccsbBroad304_08276 pLX_304 0% 57.1% 54.9% V5 (many diffs) n/a
3 TRCN0000467264 CCGTACCATTAAGGCTAAAAATGA pLX_317 36.6% 57.1% 54.9% V5 (many diffs) n/a
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