Construct: ORF TRCN0000467320

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017461.1_s317c1
Derived from:
ccsbBroadEn_02270
DNA Barcode:
TAACGCTCGCTATCCTTGATATCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM20B (9917)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467320
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9917 FAM20B FAM20B glycosaminoglycan xy... NM_001324310.1 98.7% 98.7% 1213_1227del
2 human 9917 FAM20B FAM20B glycosaminoglycan xy... NM_001324311.1 98.7% 98.7% 1213_1227del
3 human 9917 FAM20B FAM20B glycosaminoglycan xy... NM_014864.4 98.7% 98.7% 1213_1227del
4 human 9917 FAM20B FAM20B glycosaminoglycan xy... XM_017003001.2 93.5% 93.5% 377_445del;1282_1296del
5 human 9917 FAM20B FAM20B glycosaminoglycan xy... XM_017003002.1 93.5% 93.5% 377_445del;1282_1296del
6 human 9917 FAM20B FAM20B glycosaminoglycan xy... XR_002958229.1 70.8% (many diffs)
7 mouse 215015 Fam20b family with sequence simila... NM_145413.4 89.7% 96% (many diffs)
8 mouse 215015 Fam20b family with sequence simila... XM_006496736.2 89.7% 96% (many diffs)
9 mouse 215015 Fam20b family with sequence simila... XM_006496737.2 89.7% 96% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1278
ORF length:
1212
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gctaaagcag cgagtcgtgc tgttagcaat tctccttgtc atttttatct
121tcaccaaagt tttcctgatt gacaacttag atacatcagc tgccaaccgg gaggaccaga
181gggcctttca ccgaatgatg actggcttgc gggtggagct ggcacccaag ctggaccata
241ccttgcagtc tccctgggag attgcagccc agtgggtggt tccccgggaa gtgtaccctg
301aagagacacc agagctgggg gcagtcatgc atgccatggc caccaagaaa atcattaaag
361ctgatgtggg ttataaaggg acacagctga aagccttact gatacttgaa ggaggccaga
421aagttgtttt caaacctaag cggtatagcc gagaccatgt ggtggaaggg gaaccgtatg
481ctggttatga tagacacaat gcagaggtag cagcctttca cttggacagg attctgggtt
541tccaccgagc ccccttggta gttggcagat ttgttaatct tcggacagag atcaaacctg
601tcgccacaga gcagctgttg agcaccttcc taactgtagg aaacaatact tgtttttatg
661ggaagtgcta ttactgccga gaaacagaac cagcttgtgc tgatggagac ataatggagg
721gatctgtcac actttggctt ccagatgtgt ggcctctgca gaagcaccgt cacccatggg
781gcaggactta ccgagaaggc aaattggcca ggtgggagta tgatgagagc tactgtgatg
841ctgtgaagaa aacgtcccct tatgactctg gcccgcgcct cttggacatc attgacacag
901ctgtctttga ttaccTGATT GGCAATGCTG ACCGCCATCA CTATGAGAGC TTTCAAGATG
961ATGAAGGCGC TAGTATGCTC ATCCTTCTTG ATAATGCCAA AAGCTTTGGG AACCCCTCGC
1021TGGATGAAAG AAGCATTCTT GCCCCTCTCT ATCAGTGTTG CATCATTCGG GTGTCCACCT
1081GGAACAGACT GAACTACCTA AAGAATGGTG TGCTAAAGTC TGCCTTAAAA TCTGCCATGG
1141CCCATGACCC CATCTCCCCA GTGCTCTCTG ATCCTCATCT GGACGCCGTG GACCAGCGGC
1201TCCTGAGTGT CCTGGCCACC GTGAAGCAGT GCACCGACCA GTTTGGGATG GACACAGTAC
1261TGGTGGAAGA CAGGATGCCT CTCTCACACT TGTACCCAAC TTTCTTGTAC AAAGTGGTTG
1321ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1381GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATA
1441ACGCTCGCTA TCCTTGATAT CCACGCGTTA AGTCgacaat caacctctgg attacaaaat
1501ttgtgaaaga tt

Download FASTA (ORF) (Full)