Construct: ORF TRCN0000467611

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008439.1_s317c1
Derived from:
ccsbBroadEn_11319
DNA Barcode:
TTTCGTAGGATCGCGCTAAGCAAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HERC3 (8916)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467611
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8916 HERC3 HECT and RLD domain contain... NM_001318505.2 100% 100%
2 human 8916 HERC3 HECT and RLD domain contain... XM_005263332.4 40.5% 39.8% (many diffs)
3 human 8916 HERC3 HECT and RLD domain contain... XM_005263331.2 40.2% 39.5% (many diffs)
4 human 8916 HERC3 HECT and RLD domain contain... XM_005263330.4 36.6% 35.9% (many diffs)
5 human 8916 HERC3 HECT and RLD domain contain... XM_005263329.4 34.9% 34.2% (many diffs)
6 human 8916 HERC3 HECT and RLD domain contain... XM_017008806.2 34.9% 34.2% (many diffs)
7 human 8916 HERC3 HECT and RLD domain contain... NM_014606.3 34.6% 34% (many diffs)
8 human 8916 HERC3 HECT and RLD domain contain... XM_005263327.3 34.6% 34% (many diffs)
9 human 8916 HERC3 HECT and RLD domain contain... XM_017008807.1 23.6% 22.9% (many diffs)
10 human 8916 HERC3 HECT and RLD domain contain... NM_001271602.1 23.4% 22.7% (many diffs)
11 mouse 73998 Herc3 hect domain and RLD 3 XM_006506701.4 50.1% 53.6% (many diffs)
12 mouse 73998 Herc3 hect domain and RLD 3 XR_001785178.2 48.8% (many diffs)
13 mouse 73998 Herc3 hect domain and RLD 3 XR_001785177.2 45.5% (many diffs)
14 mouse 73998 Herc3 hect domain and RLD 3 XR_003956257.1 42.3% (many diffs)
15 mouse 73998 Herc3 hect domain and RLD 3 XR_001785176.2 40% (many diffs)
16 mouse 73998 Herc3 hect domain and RLD 3 XR_377496.3 39.6% (many diffs)
17 mouse 73998 Herc3 hect domain and RLD 3 NM_001361967.1 35.4% 37.8% (many diffs)
18 mouse 73998 Herc3 hect domain and RLD 3 NM_001361966.1 30.8% 32.9% (many diffs)
19 mouse 73998 Herc3 hect domain and RLD 3 NM_028705.3 30.8% 32.9% (many diffs)
20 mouse 73998 Herc3 hect domain and RLD 3 XM_006506696.3 30.8% 32.9% (many diffs)
21 mouse 73998 Herc3 hect domain and RLD 3 XM_006506697.4 30.8% 32.9% (many diffs)
22 mouse 73998 Herc3 hect domain and RLD 3 XM_006506698.4 30.8% 32.9% (many diffs)
23 mouse 73998 Herc3 hect domain and RLD 3 XM_030255634.1 30.8% 32.9% (many diffs)
24 mouse 73998 Herc3 hect domain and RLD 3 XR_377495.3 17.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1170
ORF length:
1104
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt atgttgggga tattggtctc tgggccaacc tggtatcagc accaacctgc
121agggaattgt ggctgagccc caggtgtgtg ggttcatatc tgacagaagt gtcaaggaag
181tggcctgtgg gggaaaccac tctgtgttcc tgctggaaga tggggaagtt tacacatgtg
241gtttgaacac caaggggcaa ctgggccatg agagggaagg aaacaagcca gaacaaattg
301gagctctggc agatcagcat atcattcatg tggcatgtgg cgagtcccac agtctggccc
361tcagtgaccg aggccagctg ttttcttggg gtgcagggag tgatggtcag ctaggactca
421tgactactga ggattctgtg gcagtgccca ggttaataca aaagctgaac cagcaaacaa
481tattacaagt ttcctgtggc aactggcatt gcttggctct tgcggctgat ggccagttct
541tcacctgggg aaagaacagc catgggcagc ttggcttagg gaaggagttc ccctcccaag
601ccagcccaca gagggtgagg tccctggagg ggatcccact ggctcaggtg gctgccggag
661gggctcacag ctttgccctg tctctctcag gagctgtttt tggctggggg atgaataatg
721ccgggcagcT AGGGCTCAGT GATGAAAAAG ATCGAGAATC TCCATGCCAT GTAAAACTCT
781TACGCACGCA AAAAGTTGTC TATATTAGTT GTGGAGAAGA ACACACAGCA GTTCTCACAA
841AGAGTGGAGG TGTGTTTACC TTTGGCGCTG GTTCCTGTGG GCAACTTGGA CACGACTCCA
901TGAATGATGA GGTTAACCCT AGAAGAGTTC TAGAGCTGAT GGGTAGTGAA GTAACTCAAA
961TTGCTTGTGG CAGACAACAT ACCCTAGCCT TCGTGCCTTC TTCTGGACTC ATCTATGCAT
1021TTGGTTGTGG AGCAAGAGGT CAATTAGGAA CTGGGCACAC TTGTAATGTT AAGTGCCCAT
1081CTCCTGTCAA GGGTTACTGG GCTGCCCACA GTGGCCAGCT TTCAGCCCGA GCTGGTAAGA
1141ATGATTGTCT CTGGAATTTA AAGGTATTTT ACCCAACTTT CTTGTACAAA GTGGTTGATA
1201TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1261CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATTTCG
1321TAGGATCGCG CTAAGCAAGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1381tgaaagatt

Download FASTA (ORF) (Full)