Construct: ORF TRCN0000467621

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004316.1_s317c1
Derived from:
ccsbBroadEn_12941
DNA Barcode:
CGACGAAGTTCTCCGTGTCATCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YIF1B (90522)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467621
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90522 YIF1B Yip1 interacting factor hom... XM_017027449.1 100% 100%
2 human 90522 YIF1B Yip1 interacting factor hom... NM_001145463.2 98.4% 97.9% (many diffs)
3 human 90522 YIF1B Yip1 interacting factor hom... XM_017027450.1 97.4% 96.9% (many diffs)
4 human 90522 YIF1B Yip1 interacting factor hom... XM_017027451.1 95.6% 94.5% (many diffs)
5 human 90522 YIF1B Yip1 interacting factor hom... NM_001039673.3 87.6% 80.2% (many diffs)
6 human 90522 YIF1B Yip1 interacting factor hom... NM_001039672.3 86.8% 79.5% (many diffs)
7 human 90522 YIF1B Yip1 interacting factor hom... NM_001039671.3 83.6% 75.3% (many diffs)
8 human 90522 YIF1B Yip1 interacting factor hom... NM_001145461.2 82.5% 75.1% (many diffs)
9 human 90522 YIF1B Yip1 interacting factor hom... NM_001145462.2 78.8% 71.7% (many diffs)
10 human 90522 YIF1B Yip1 interacting factor hom... XM_005259385.4 78.8% 71.7% (many diffs)
11 mouse 77254 Yif1b Yip1 interacting factor hom... NM_001110201.1 75.7% 75.5% (many diffs)
12 mouse 77254 Yif1b Yip1 interacting factor hom... NM_029887.3 75% 74.8% (many diffs)
13 mouse 77254 Yif1b Yip1 interacting factor hom... NM_001357664.1 73.1% 72.6% (many diffs)
14 mouse 77254 Yif1b Yip1 interacting factor hom... NM_001357666.1 68.3% 68.1% (many diffs)
15 mouse 77254 Yif1b Yip1 interacting factor hom... NM_001357668.1 68.3% 68.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
948
ORF length:
882
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca cccggcaggc ttggcggcgg cggctgcggg gacgccccgg ctgccctcga
121agcggaggat ccctgtgtcc cagccgggca tggccgaccc ccaccagctt ttcgatgaca
181caagttcagc ccagagccgg ggctatgggg cccagcgggc acctggtggc ctgagttatc
241ctgcagcctc tcccacgccc catgcagcct tcctggctga cccggtgtcc aacatggcca
301tggcctatgg gagcagcctg gccgcgcagg gcaaggagct ggtggataag aacatcgacc
361gcttcatccc catcaccaag ctcaagtatt actttgctgt ggacaccatg tatgtgggca
421gaaagctggg cctgctgttc ttcccctacc tacaccagga ctgggaagtg cagtaccaac
481aggacacccc ggtggccccc cgctttgacg tcaatgcccc ggacctctac attccagcaa
541tggctttcat cacctacgtt ttggtggctg gtcttgcgct ggggacccag gataggttct
601ccccagacct cctggggctg caagcgagct cagccctggc ctggctgacc ctggaggtgc
661tggccatcct gctcagcctc tatctggtca ctgtcaacac cgacctcacc accatcgacc
721tgGTGGCCTT CTTGGGCTAC AAATATGTCG GGATGATTGG CGGGGTCCTC ATGGGCCTGC
781TCTTCGGGAA GATTGGCTAC TACCTGGTGC TGGGCTGGTG CTGCGTAGCC ATCTTTGTGT
841TCATGTTTCC CCTTTTGCCG GGCGCGGTGG CTCATGCTTG TAATCCCAGC ACTTTGGGAG
901GCCGAGGCGG TCGGATCACG AGGTCAGGAG ATCAAGACCA TCCTGGCTAC CTAACTTTCT
961TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1021CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1081GTGGAAAGGA CGACGACGAA GTTCTCCGTG TCATCAAACG CGTTAAGTCg acaatcaacc
1141tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)