Construct: ORF TRCN0000467752

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004717.1_s317c1
Derived from:
ccsbBroadEn_11419
DNA Barcode:
GTAATATTCCAGCCTGGATTACCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAJC6 (9829)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467752
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9829 DNAJC6 DnaJ heat shock protein fam... NM_001256864.2 99.9% 100% 1500G>A;2010A>C
2 human 9829 DNAJC6 DnaJ heat shock protein fam... NM_014787.4 93.2% 93.4% (many diffs)
3 human 9829 DNAJC6 DnaJ heat shock protein fam... NM_001256865.1 92.7% 92.7% 0_1ins210;1290G>A;1800A>C
4 mouse 72685 Dnajc6 DnaJ heat shock protein fam... NM_001164583.1 87.5% 92.8% (many diffs)
5 mouse 72685 Dnajc6 DnaJ heat shock protein fam... XM_006503421.3 84.1% 88.7% (many diffs)
6 mouse 72685 Dnajc6 DnaJ heat shock protein fam... NM_001164584.1 83.4% 88.6% (many diffs)
7 mouse 72685 Dnajc6 DnaJ heat shock protein fam... NM_001164585.1 81.3% 87.2% (many diffs)
8 mouse 72685 Dnajc6 DnaJ heat shock protein fam... NM_198412.2 81.3% 87.2% (many diffs)
9 mouse 72685 Dnajc6 DnaJ heat shock protein fam... XM_017320393.1 81.3% 87.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2979
ORF length:
2910
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gagcctcctc gggagctacc ggaaaaagac cagcaacgat ggttatgaat
121ctttgcagct ggtggacagt aacggggact taagtgcggg aagcggcggg gttggcggca
181agcagagagt gaacgccggg gcagcggcgc ggagtcccgc ccgacagcct ccggaccgcg
241ccagcaccat ggacagctca ggtgcctcat ctccagacat ggagcccagc tatgggggag
301gtctctttga catggtaaaa ggaggtgcag ggaggctctt tagtaaccta aaggacaact
361tgaaagacac cctcaaagac acatcttcta gagtgataca atctgtgacc agctacacaa
421agggagattt agacttcact tatgttacct ccagaattat tgtgatgtcc tttcctctgg
481acaatgttga cataggattc aggaatcagg ttgatgacat tcgaagcttt ttggattcca
541gacatcttga ccactacaca gtatacaatc tgtcacctaa gtcttatcga actgccaagt
601ttcacagccg ggtctcagaa tgcagttggc ccattaggca ggctcccagt ctgcacaacc
661tttttgctgt gtgtcggaat atgtataact ggctactgca gaatcccaaa aatgtctgtg
721ttgtccactg cttggatgga cgggcggcat catcaattct ggttggtgct atgttcattt
781tctgtaatct ctactctact cctggcccag ccattcgatt gctatatgca aagcgaccag
841gaattggact ttcaccatcc cataggagat acctgggcta tatgtgtgac ctactggcag
901acaagcccta ccgccctcac ttcaagcctc tcacaattaa gtcgatcact gtcagtccaa
961tacccttttt caacaaacag aggaatggat gtcgccctta ctgtgatgta ctcattggag
1021aaaccaaaat atattcgact tgcacagatt ttgaacgaat gaaagaatat cgtgtccaag
1081atggaaaaat cttcattccc ttgaacatca ctgtgcaagg agacgtggtt gtttccatgt
1141atcacttgag gtcaaccatt gggagccggc tacaggctaa ggtgaccaac acacagatat
1201tccagcttca gtttcacact ggattcatac cactggacac aacagtttta aagttcacca
1261agcctgagtt agatgcatgt gatgtaccag aaaaatatcc tcagctattt caggtgacac
1321tggatgtaga actacagccc catgacaaag taatagactt aactccacca tgggaacatt
1381actgcacaaa agatgtcaat cccagcatcc tcttctcttc tcaccaggaa catcaagata
1441cgctggcctt aggaggacag gctccaatag atatccctcc agacaacccc aggcattacg
1501gacaaagtgg tttctttgcc tctctctgtt ggcaagatca gaaatcggag aagtcattct
1561gtgaggaaga ccacgctgcc ctagtgaatc aggaaagtga gcaatcagat gatgaacttc
1621tgacactttc cagtccgcat ggcaatgcca atggtgacaa gcctcatgga gtcaagaagc
1681ccagcaaaaa gcagcaggag ccagcagccc ctccaccccc tgaggatgtg gaccttttgg
1741gcctggaagg gtctgcaatg agtaacagct tctctccgcc agcggctcct cccaccaatt
1801ctgaactact gagtgacctg tttgggggtg gaggtgcagc tggtcccacc caggctggac
1861agtcaggagt ggaagatgtg tttcatccta gtggacctgc gtctacccag tcaacaccac
1921gccgctctgc cacctccacc tctgcgtctc caaccctaag agtgggagaa ggtgccacct
1981ttgacccatt tggagcacct tctaaaccat caggtcagga tttgctgggt tcttttctga
2041acacatccag tgcttccagt gacccctttc tccagcccac aagaagtcct tcgcccacag
2101tacatgcttc tagtacgcct gctgtgaaca ttcagccaga tgtttctgga ggttgggact
2161ggcatgctaa accaggaggc tttggaatgg gaagcaagtc agctgccacc agcccaaccg
2221gatcctcgca tggtactccc acccatcaaa gcaaacccca gactctggat ccttttgccg
2281accttgggac actaggtagt tcttcctttg ccagcaaacc caccacacca actggattgg
2341gtggaggatt cccgcctctc agctcgccac agaaggcgtc tccccagcct atgggtggcg
2401ggtggcagca gggaggtgcc tacaactggc agcagccaca gcctaagcct cagcccagca
2461tgccccactc ctctccccag aaccgaccca actacaacgt gagcttctca gccatgcctg
2521ggggccagaa cgaacgtggg aaaggatcaa gtaatttgga agggaaacaa aaagcagctg
2581attttgaaga ccTACTCTCT GGTCAAGGTT TCAATGCTCA CAAAGACAAA AAGGGGCCTC
2641GGACAATAGC TGAGATGAGA AAGGAGGAAA TGGCCAAGGA AATGGATCCT GAGAAATTAA
2701AGATTCTGGA ATGGATTGAA GGCAAAGAAA GAAATATCAG AGCCCTTCTT TCCACGATGC
2761ATACCGTACT ATGGGCTGGG GAGACCAAGT GGAAACCAGT TGGCATGGCA GACCTGGTAA
2821CACCAGAGCA GGTGAAGAAG GTGTACAGGA AGGCTGTCCT GGTGGTGCAC CCAGATAAAG
2881CTACTGGGCA ACCCTATGAA CAATACGCAA AGATGATTTT CATGGAGCTC AATGATGCCT
2941GGTCTGAATT TGAAAACCAA GGCCAAAAGC CCTTATATTT GCCAACTTTC TTGTACAAAG
3001TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
3061GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
3121ACGAGTAATA TTCCAGCCTG GATTACCTAC GCGTTAAGTC gacaatcaac ctctggatta
3181caaaatttgt gaaagatt

Download FASTA (ORF) (Full)

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