Transcript: Human NM_014787.4

Homo sapiens DnaJ heat shock protein family (Hsp40) member C6 (DNAJC6), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
DNAJC6 (9829)
Length:
5750
CDS:
163..2904

Additional Resources:

NCBI RefSeq record:
NM_014787.4
NBCI Gene record:
DNAJC6 (9829)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014787.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000284758 CACGATGCATACCGTACTATG pLKO_005 2676 CDS 100% 10.800 15.120 N DNAJC6 n/a
2 TRCN0000001903 GCCTCTCACAATTAAGTCGAT pLKO.1 849 CDS 100% 2.640 3.696 N DNAJC6 n/a
3 TRCN0000272428 GCCTCTCACAATTAAGTCGAT pLKO_005 849 CDS 100% 2.640 3.696 N DNAJC6 n/a
4 TRCN0000272478 TTGTCTGAGAATAGGATTAAT pLKO_005 3244 3UTR 100% 15.000 10.500 N DNAJC6 n/a
5 TRCN0000001902 CGTGGGAAAGGATCAAGTAAT pLKO.1 2458 CDS 100% 13.200 9.240 N DNAJC6 n/a
6 TRCN0000272426 CGTGGGAAAGGATCAAGTAAT pLKO_005 2458 CDS 100% 13.200 9.240 N DNAJC6 n/a
7 TRCN0000379872 TTTGCTGTGTGTCGGAATATG pLKO_005 586 CDS 100% 13.200 9.240 N DNAJC6 n/a
8 TRCN0000010666 CCTTCTGACATGATTTACTTT pLKO.1 5216 3UTR 100% 5.625 3.938 N DNAJC6 n/a
9 TRCN0000001905 CACTTATGTTACCTCCAGAAT pLKO.1 360 CDS 100% 4.950 3.465 N DNAJC6 n/a
10 TRCN0000001904 CCAGCTACACAAAGGGAGATT pLKO.1 332 CDS 100% 4.950 3.465 N DNAJC6 n/a
11 TRCN0000272480 CCAGCTACACAAAGGGAGATT pLKO_005 332 CDS 100% 4.950 3.465 N DNAJC6 n/a
12 TRCN0000166364 CACACACACACACACACACAA pLKO.1 5330 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014787.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11419 pDONR223 100% 93.2% 93.4% None (many diffs) n/a
2 ccsbBroad304_11419 pLX_304 0% 93.2% 93.4% V5 (many diffs) n/a
3 TRCN0000467752 GTAATATTCCAGCCTGGATTACCT pLX_317 13.5% 93.2% 93.4% V5 (many diffs) n/a
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