Construct: ORF TRCN0000467796

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011124.1_s317c1
Derived from:
ccsbBroadEn_14102
DNA Barcode:
CCCCAAGCTGACCCAAAACTTGAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZZZ3 (26009)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467796
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26009 ZZZ3 zinc finger ZZ-type contain... NM_001308237.1 99.6% 99% (many diffs)
2 human 26009 ZZZ3 zinc finger ZZ-type contain... XM_005270729.4 99.6% 99% (many diffs)
3 human 26009 ZZZ3 zinc finger ZZ-type contain... XM_024446298.1 99.6% 99% (many diffs)
4 human 26009 ZZZ3 zinc finger ZZ-type contain... XM_017000972.1 99.4% 98.7% (many diffs)
5 human 26009 ZZZ3 zinc finger ZZ-type contain... NM_015534.6 45% 43.9% (many diffs)
6 human 26009 ZZZ3 zinc finger ZZ-type contain... XM_005270725.3 45% 43.9% (many diffs)
7 human 26009 ZZZ3 zinc finger ZZ-type contain... XM_005270726.3 45% 43.9% (many diffs)
8 human 26009 ZZZ3 zinc finger ZZ-type contain... XM_005270727.4 44.9% 43.8% (many diffs)
9 human 26009 ZZZ3 zinc finger ZZ-type contain... XM_017000970.2 44.9% 43.8% (many diffs)
10 human 26009 ZZZ3 zinc finger ZZ-type contain... XR_001737104.1 16.5% (many diffs)
11 human 26009 ZZZ3 zinc finger ZZ-type contain... XR_001737103.1 14.6% (many diffs)
12 mouse 108946 Zzz3 zinc finger, ZZ domain cont... NM_001346655.1 88.7% 93.8% (many diffs)
13 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_006500857.3 88.7% 93.8% (many diffs)
14 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_006500855.3 86.5% 91% (many diffs)
15 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_006500856.3 86.3% 90.8% (many diffs)
16 mouse 108946 Zzz3 zinc finger, ZZ domain cont... NM_001080755.2 39.9% 41.3% (many diffs)
17 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_006500848.3 39.9% 41.3% (many diffs)
18 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_006500850.3 39.9% 41.3% (many diffs)
19 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_006500851.3 39.9% 41.3% (many diffs)
20 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_017319423.1 39.9% 41.3% (many diffs)
21 mouse 108946 Zzz3 zinc finger, ZZ domain cont... NM_001287139.1 39.7% 41.2% (many diffs)
22 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_006500852.3 39.7% 41.2% (many diffs)
23 mouse 108946 Zzz3 zinc finger, ZZ domain cont... XM_011239984.2 17.7% 17.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1293
ORF length:
1227
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat agatctttgg ttgtactgtt atcagagact attacagacg attgctgtac
121tcgaggctca gcgttctcaa gcagtccaag accttgaaag tttaggcagg caccagagag
181aagcactgaa aaatcccatt ggatttgtgg aaaaactcca gaagaaggct gatattgggc
241ttccatatcc acagagagtt gttcaattgc ctgagatcgt atgggaccaa tatacccata
301gccttgggaa ttttgaaaga gaatttaaaa atcgtaaaag acatactaga agagttaagc
361tagtttttgg taaagtaggt ttacctgcta gaccaaaaag tcctttagat cctaagaagg
421atggagagtc cctttcatat tctatgttgc ctttgagtga tggtccagaa ggctcaagca
481gtcgtcctca gatgataaga ggacgcttgt gtgatgatac caaacctgaa acatttaacc
541agttgtggac tgttgaagaa cagaaaaagc tggaacagct actcatcaaa taccctcctg
601aagaagtaga atctcgacgc tggcagaaga tagcagatga attgggcaac aggacagcaa
661aacaggttgc cagccaagta cagaagtatt tcataaagct aactaaagct ggcattccag
721taccaggcag aacaccaaac ttatgtatat actccaaaaa gtcttcaaca agcagacgac
781agcaccctct taataagcat ctctttaagc cttccacttt catgacttca catgaaccgc
841cagtgtatat ggatgaagat gatgaccgat cttgttttca tagccacatg aacactgctg
901ttGAAGATGC ATCAGATGAC GAAAGTATTC CTATCATGTA TAGGAATTTA CCTGAATATA
961AAGAACTATT ACAGTTTAAA AAGTTAAAGA AGCAGAAACT TCAGCAAATG CAAGCTGAAA
1021GTGGATTTGT GCAACATGTG GGCTTTAAGT GTGATAACTG TGGCATAGAA CCCATCCAGG
1081GTGTTCGGTG GCATTGCCAG GATTGTCCTC CAGAAATGTC TTTGGATTTC TGTGATTCTT
1141GTTCAGACTG TCTACATGAA ACAGATATTC ACAAGGAAGA TCACCAATTA GAACCTATTT
1201ATAGGTCAGA GACATTCTTA GACAGAGACT ACTGTGTGTC TCAGGGCACC AGTTACAATT
1261ACCTTGACCC AAACTACTTT CCAGCAAACA GATGCCCAAC TTTCTTGTAC AAAGTGGTTG
1321ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1381GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGACC
1441CCAAGCTGAC CCAAAACTTG AAACGCGTTA AGTCgacaat caacctctgg attacaaaat
1501ttgtgaaaga tt

Download FASTA (ORF) (Full)

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