Construct: ORF TRCN0000467832

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001906.1_s317c1
Derived from:
ccsbBroadEn_08416
DNA Barcode:
ATCTGAGAGGATTAGAATCCCTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYTL2 (54843)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467832
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54843 SYTL2 synaptotagmin like 2 NM_001365828.1 99.9% 99.7% 6C>A
2 human 54843 SYTL2 synaptotagmin like 2 NM_001365829.1 99.9% 99.7% 6C>A
3 human 54843 SYTL2 synaptotagmin like 2 NM_001365830.1 99.9% 99.7% 6C>A
4 human 54843 SYTL2 synaptotagmin like 2 NM_206929.3 99.9% 99.7% 6C>A
5 human 54843 SYTL2 synaptotagmin like 2 NM_001365833.1 97% 96.8% 0_1ins31;2_3insGA
6 human 54843 SYTL2 synaptotagmin like 2 NM_206930.3 97% 96.8% 0_1ins31;2_3insGA
7 human 54843 SYTL2 synaptotagmin like 2 NM_001162952.2 89.2% 89% 6C>A;36_37ins120
8 human 54843 SYTL2 synaptotagmin like 2 NM_001289610.1 89.2% 89% 6C>A;36_37ins120
9 human 54843 SYTL2 synaptotagmin like 2 NM_001365835.1 87.5% 87.4% 1_159del;165C>A
10 human 54843 SYTL2 synaptotagmin like 2 NM_001365831.1 86.4% 86.1% 0_1ins138;3_4insACGTCCTTGTCTTCT
11 human 54843 SYTL2 synaptotagmin like 2 XM_011545116.2 86.4% 86.1% 0_1ins138;3_4insACGTCCTTGTCTTCT
12 human 54843 SYTL2 synaptotagmin like 2 XM_017017939.1 84.4% 84.2% 1_207del;213C>A
13 human 54843 SYTL2 synaptotagmin like 2 NM_001365834.1 81.9% 81.6% 0_1ins31;2_3insGA;395_396ins171
14 human 54843 SYTL2 synaptotagmin like 2 NM_001365832.1 71.2% 71% 0_1ins138;3_4insACGTCCTTGTCTTCT;275_276ins171
15 human 54843 SYTL2 synaptotagmin like 2 NM_001289609.1 67.8% 67.8% 0_1ins363
16 human 54843 SYTL2 synaptotagmin like 2 XM_017017937.1 42.8% 42.8% 1_1500del;1506C>A
17 human 54843 SYTL2 synaptotagmin like 2 NM_001289608.1 41.6% 41.5% 1_1578del;1584C>A
18 human 54843 SYTL2 synaptotagmin like 2 NM_001365827.1 41.2% 37.1% (many diffs)
19 human 54843 SYTL2 synaptotagmin like 2 XM_005274062.2 40.6% 40.5% 1_1644del;1650C>A
20 human 54843 SYTL2 synaptotagmin like 2 NM_001162951.2 40.2% 40.1% 1_1674del;1680C>A
21 human 54843 SYTL2 synaptotagmin like 2 NM_001162953.2 40.1% 40.1% 1_1677del;1683C>A
22 human 54843 SYTL2 synaptotagmin like 2 XM_005274061.1 39.5% 39.4% 1_1722del;1728C>A
23 human 54843 SYTL2 synaptotagmin like 2 XM_005274060.1 39.5% 39.4% 1_1725del;1731C>A
24 human 54843 SYTL2 synaptotagmin like 2 XM_005274066.1 39.4% 35.8% (many diffs)
25 human 54843 SYTL2 synaptotagmin like 2 NM_032943.4 39.1% 35.2% (many diffs)
26 human 54843 SYTL2 synaptotagmin like 2 NM_001365826.1 39% 35.2% (many diffs)
27 human 54843 SYTL2 synaptotagmin like 2 XM_017017936.1 17.9% 17.8% 1_5160del;5166C>A
28 human 54843 SYTL2 synaptotagmin like 2 XM_017017935.1 17.3% 17.2% 1_5385del;5391C>A
29 human 54843 SYTL2 synaptotagmin like 2 XM_011545109.2 17.1% 17.1% 1_5442del;5448C>A
30 human 54843 SYTL2 synaptotagmin like 2 XM_017017934.1 16.9% 16.9% 1_5505del;5511C>A
31 human 54843 SYTL2 synaptotagmin like 2 XM_011545107.2 16.9% 16.9% 1_5508del;5514C>A
32 human 54843 SYTL2 synaptotagmin like 2 NM_206928.3 16.9% 16.8% 1_5538del;5544C>A
33 human 54843 SYTL2 synaptotagmin like 2 XM_005274057.1 16.8% 16.8% 1_5541del;5547C>A
34 human 54843 SYTL2 synaptotagmin like 2 XM_011545106.1 16.7% 16.7% 1_5586del;5592C>A
35 human 54843 SYTL2 synaptotagmin like 2 NM_206927.3 16.7% 16.7% 1_5589del;5595C>A
36 human 54843 SYTL2 synaptotagmin like 2 XM_011545108.1 16.3% 14.9% (many diffs)
37 human 54843 SYTL2 synaptotagmin like 2 XR_001747912.1 14.4% (many diffs)
38 human 54843 SYTL2 synaptotagmin like 2 XM_011545110.1 14.2% 14.2% 1_5589del;5595C>A;6017_6018ins171
39 mouse 83671 Sytl2 synaptotagmin-like 2 NM_001040087.2 89.2% 94.9% (many diffs)
40 mouse 83671 Sytl2 synaptotagmin-like 2 NM_001289586.1 89.2% 94.9% (many diffs)
41 mouse 83671 Sytl2 synaptotagmin-like 2 NM_001040088.2 79.4% 84.8% (many diffs)
42 mouse 83671 Sytl2 synaptotagmin-like 2 NM_001289585.1 78.1% 83.5% (many diffs)
43 mouse 83671 Sytl2 synaptotagmin-like 2 NM_001289584.1 36.3% 38.6% (many diffs)
44 mouse 83671 Sytl2 synaptotagmin-like 2 NM_001040085.2 35.9% 38.2% (many diffs)
45 mouse 83671 Sytl2 synaptotagmin-like 2 NM_001289583.1 35.3% 37.5% (many diffs)
46 mouse 83671 Sytl2 synaptotagmin-like 2 NM_031394.3 35.1% 33.5% (many diffs)
47 mouse 83671 Sytl2 synaptotagmin-like 2 XM_006508359.3 18.7% 19.9% (many diffs)
48 mouse 83671 Sytl2 synaptotagmin-like 2 XM_006508358.3 17.5% 18.7% (many diffs)
49 mouse 83671 Sytl2 synaptotagmin-like 2 XM_006508356.3 15.7% 16.7% (many diffs)
50 mouse 83671 Sytl2 synaptotagmin-like 2 XM_006508357.3 15.6% 14.9% (many diffs)
51 mouse 83671 Sytl2 synaptotagmin-like 2 XM_006508355.3 15.5% 16.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1194
ORF length:
1128
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag aaagtctgtt ccagcatttc tccaagatga gagtgatgac agagaaacag
121atacagcatc agaaagcagt taccagctca gcagacacaa gaagagcccg agctctttaa
181ccaatcttag cagctcctct ggcatgacgt ccttgtcttc tgtgagtggc agtgtgatga
241gtgtttatag tggagacttt ggcaatctgg aagttaaagg aaatattcag tttgcaattg
301aatatgtgga gtcactgaag gagttgcatg tttttgtggc ccagtgtaag gacttagcag
361cagcggatgt aaaaaaacag cgttcagacc catatgtaaa ggcctatttg ctaccagaca
421aaggcaaaat gggcaagaag aaaacactcg tagtgaagaa aaccttgaat cctgtgtata
481acgaaatact gcggtataaa attgaaaaac aaatcttaaa gacacagaaa ttgaacctgt
541ccatttggca tcgggataca tttaagcgca atagtttcct aggggaggtg gaacttgatt
601tggaaacatg ggactgggat aacaaacaga ataaacaatt gagatggtac cctctgaagc
661ggaagacagc accagttgcc cttgaagcag aaaacagagg tgaaatgaaa ctagctctcc
721agtatgtccc agagccagtc cctggtaaaa agcttcctac aactggagaa gtgcacatct
781gggtgaagga atgccttgat ctacCACTGC TAAGGGGAAG TCATCTAAAT TCTTTTGTTA
841AATGTACCAT CCTTCCAGAT ACAAGTAGGA AAAGTCGCCA GAAGACAAGA GCTGTAGGGA
901AAACCACCAA CCCTATCTTC AACCACACTA TGGTGTATGA TGGGTTCAGG CCTGAAGATC
961TGATGGAAGC CTGTGTAGAG CTTACTGTCT GGGACCATTA CAAATTAACC AACCAATTTT
1021TGGGAGGTCT TCGTATTGGC TTTGGAACAG GTAAAAGTTA TGGGACTGAA GTGGACTGGA
1081TGGACTCTAC TTCAGAGGAA GTTGCTCTCT GGGAGAAGAT GGTAAACTCC CCCAATACTT
1141GGATTGAAGC AACACTGCCT CTCAGAATGC TTTTGATTGC CAAGATTTCC AAATGCCCAA
1201CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1261ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1321TATCTTGTGG AAAGGACGAA TCTGAGAGGA TTAGAATCCC TTCACGCGTT AAGTCgacaa
1381tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)