Construct: ORF TRCN0000467837
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001003.1_s317c1
- Derived from:
- ccsbBroadEn_02050
- DNA Barcode:
- CAGATACGCTTGTAGGTTTTACTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RAB29 (8934)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467837
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | NM_001135662.2 | 100% | 100% | |
| 2 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | NM_003929.3 | 100% | 100% | |
| 3 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | XM_005245569.1 | 100% | 100% | |
| 4 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | XM_005245570.1 | 100% | 100% | |
| 5 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | XM_005245571.1 | 100% | 100% | |
| 6 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | NM_001135663.2 | 88.1% | 88.1% | 122_123ins72 |
| 7 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | XM_017002748.1 | 88.1% | 88.1% | 122_123ins72 |
| 8 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | XM_017002749.1 | 88.1% | 88.1% | 122_123ins72 |
| 9 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | XM_017002750.1 | 88.1% | 88.1% | 122_123ins72 |
| 10 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | NM_001135664.2 | 64.5% | 64.5% | 0_1ins216 |
| 11 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | XM_006711605.3 | 64.5% | 64.5% | 0_1ins216 |
| 12 | human | 8934 | RAB29 | RAB29, member RAS oncogene ... | XM_006711606.3 | 64.5% | 64.5% | 0_1ins216 |
| 13 | mouse | 226422 | Rab29 | RAB29, member RAS oncogene ... | NM_144875.2 | 90.5% | 93.1% | (many diffs) |
| 14 | mouse | 226422 | Rab29 | RAB29, member RAS oncogene ... | XM_011247983.1 | 65% | 57% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 675
- ORF length:
- 609
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg cagccgcgac cacctgttca aagtgctggt ggtgggggac gccgcagtgg 121 gcaagacgtc gctggtgcag cgatattccc aggacagctt cagcaaacac tacaagtcca 181 cggtgggagt ggattttgct ctgaaggttc tccagtggtc tgactacgag atagtgcggc 241 ttcagctgtg ggatattgca gGGCAGGAGC GCTTCACCTC TATGACACGA TTGTATTATC 301 GGGATGCCTC TGCCTGTGTT ATTATGTTTG ACGTTACCAA TGCCACTACC TTCAGCAACA 361 GCCAGAGGTG GAAACAGGAC CTAGACAGCA AGCTCACACT ACCCAATGGA GAGCCGGTGC 421 CCTGCCTGCT CTTGGCCAAC AAGTGTGATC TGTCCCCTTG GGCAGTGAGC CGGGACCAGA 481 TTGACCGGTT CAGTAAAGAG AACGGTTTCA CAGGTTGGAC AGAAACATCA GTCAAGGAGA 541 ACAAAAATAT TAATGAGGCT ATGAGAGTCC TCATTGAAAA GATGATGAGA AATTCCACAG 601 AAGATATCAT GTCTTTGTCC ACCCAAGGGG ACTACATCAA TCTACAAACC AAGTCCTCCA 661 GCTGGTCCTG CTGCTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 721 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 781 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CAGATACGCT TGTAGGTTTT 841 ACTCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt