Construct: ORF TRCN0000467994

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011519.1_s317c1
Derived from:
ccsbBroadEn_12135
DNA Barcode:
TCGGGCTATCTAAAGCACTCATGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STX17 (55014)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467994
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55014 STX17 syntaxin 17 XR_001746332.1 58.6% (many diffs)
2 human 55014 STX17 syntaxin 17 NM_017919.3 46.4% 46% (many diffs)
3 human 55014 STX17 syntaxin 17 XM_011518820.3 46.4% 46% (many diffs)
4 human 55014 STX17 syntaxin 17 XM_011518821.3 46.4% 46% (many diffs)
5 human 55014 STX17 syntaxin 17 XM_011518823.3 17.1% 16.5% (many diffs)
6 human 55014 STX17 syntaxin 17 XM_017014875.2 17.1% 16.5% (many diffs)
7 human 55014 STX17 syntaxin 17 XM_024447593.1 17.1% 16.5% (many diffs)
8 mouse 67727 Stx17 syntaxin 17 NM_026343.2 38.8% 42.9% (many diffs)
9 mouse 67727 Stx17 syntaxin 17 XM_006538208.1 38.8% 42.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
495
ORF length:
429
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc TGAAGATGAA GAAAAAGTGA AATTACGCCG TCTTGAACCA GCTATCCAGA
121AATTCATTAA GATAGTAATC CCAACAGACC TGGAAAGGTT AAGAAAGCAC CAGATAAATA
181TTGAGAAGTA TCAAAGGTGC AGAATCTGGG ACAAGTTGCA TGAAGAGCAT ATCAATGCAG
241GACGTACAGT TCAGCAACTC CGATCCAATA TCCGAGAAAT TGAGAAACTT TGTTTGAAAG
301TCCGAAAGGA TGACCTAGTA CTTCTGAAGA GAATGATAGA TCCTGTTAAA GAAGAAGCAT
361CAGCAGCAAC AGCAGAATTT CTCCAACTCC ATTTGGAATC TGTAGAAGAA CTTAAGAAGC
421AATTTAATGA TGAAGAAACT TTGCTACAGC CTCCTTTGAC CAGATCCATG ACTGTTGGTG
481GTAATGTATT GTGCTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
541CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
601TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TCGGGCTATC TAAAGCACTC
661ATGGACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)

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