Construct: ORF TRCN0000468009
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014604.1_s317c1
- Derived from:
- ccsbBroadEn_12764
- DNA Barcode:
- ATAAATATGGCGTGATTGGTGGTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IMMP2L (83943)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468009
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350962.2 | 100% | 100% | |
| 2 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350963.2 | 90.5% | 92.7% | 306_312delGTTTCCCins25 |
| 3 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446958.1 | 84.9% | 67.7% | (many diffs) |
| 4 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446957.1 | 79.9% | 72.1% | (many diffs) |
| 5 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446960.1 | 79% | 71.6% | (many diffs) |
| 6 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446959.1 | 78.7% | 73.2% | (many diffs) |
| 7 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_011516611.2 | 78.3% | 67.7% | (many diffs) |
| 8 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446961.1 | 77.2% | 73.6% | (many diffs) |
| 9 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446962.1 | 73.7% | 72.7% | 239delT;241T>G;246_247ins85 |
| 10 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350964.2 | 73.6% | 72.7% | (many diffs) |
| 11 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_011516609.2 | 72.4% | 73.9% | 240_323del;390_396delGTTTCCCins25 |
| 12 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001244606.2 | 60.6% | 59.4% | (many diffs) |
| 13 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350959.2 | 60.6% | 59.4% | (many diffs) |
| 14 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350960.2 | 60.6% | 59.4% | (many diffs) |
| 15 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_032549.4 | 60.6% | 59.4% | (many diffs) |
| 16 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_011516608.2 | 60.2% | 59% | (many diffs) |
| 17 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012704.1 | 60.2% | 59% | (many diffs) |
| 18 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012703.1 | 57.6% | 56.5% | (many diffs) |
| 19 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350961.2 | 52.2% | 51.2% | (many diffs) |
| 20 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012701.1 | 44.2% | 43.3% | (many diffs) |
| 21 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012702.1 | 44.2% | 43.3% | (many diffs) |
| 22 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012699.1 | 39.6% | 38.8% | (many diffs) |
| 23 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012700.1 | 39.6% | 38.8% | (many diffs) |
| 24 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446956.1 | 36.5% | 33.7% | (many diffs) |
| 25 | mouse | 93757 | Immp2l | IMP2 inner mitochondrial me... | NM_053122.4 | 54.6% | 55.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 420
- ORF length:
- 330
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGCACAGTC ACAAGGGTGG GTGAAAAGAT 121 ACATCAAGGC CTTTTGTAAA GGCTTCTTTG TGGCGGTGCC TGTGGCAGTG ACTTTCTTGG 181 ATCGGGTCGC CTGTGTGGCA AGAGTAGAAG GAGCATCGAT GCAGCCTTCT TTGAATCCTG 241 GGGGGAGCCA GTCATCTGAT GTGGTGCTTT TGAACCACTG GAAAGTGAGG AATTTTGAAG 301 TACACCGTGG TGACATTGTA TCATTGGTGT CTCCTAAAAA CCCAGAACAG AAGATCATTA 361 AGAGAGTGAT TGCTCTTGAA GGAGATATTG TCAGAGATGG GAGAAAACTG AAAAGGATAT 421 GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 481 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 541 TTTATATATC TTGTGGAAAG GACGAATAAA TATGGCGTGA TTGGTGGTAA CGCGTTAAGT 601 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt