Construct: ORF TRCN0000468020

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001386.1_s317c1
Derived from:
ccsbBroadEn_04667
DNA Barcode:
CCTTCGTACCCTAACCATAAATCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C1QTNF3 (114899)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468020
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114899 C1QTNF3 C1q and TNF related 3 NM_181435.6 100% 100%
2 human 114899 C1QTNF3 C1q and TNF related 3 NM_030945.4 77.1% 77.1% 82_83ins219
3 human 114899 C1QTNF3 C1q and TNF related 3 NR_146599.1 20.7% (many diffs)
4 human 100534612 C1QTNF3-AMACR C1QTNF3-AMACR readthrough (... NR_037951.1 19.2% (many diffs)
5 mouse 81799 C1qtnf3 C1q and tumor necrosis fact... NM_001204134.1 90.9% 93.1% (many diffs)
6 mouse 81799 C1qtnf3 C1q and tumor necrosis fact... NM_030888.4 69.8% 73.9% (many diffs)
7 mouse 81799 C1qtnf3 C1q and tumor necrosis fact... XR_383836.3 37.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1026
ORF length:
957
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gctttggagg cagctcatct attggcaact gctggctttg tttttcctcc
121ctttttgcct gtgtcaagat gaatacatgg aggtgagcgg aagaactaat aaagtggtgg
181caagaatagt gcaaagccac cagcagactg gccgtagcgg ctccaggagg gagaaagtga
241gagagcggag ccatcctaaa actgggactg tggataataa cacttctaca gacctaaaat
301ccctgagacc agatgagcta ccgcaccccg aggtagatga cctagcccag atcaccacat
361tctggggcca gtctccacaa accggaggac tacccccaga ctgcagtaag tgttgtcatg
421gagactacag ctttcgaggc taccaaggcc cccctgggcc accgggccct cctggcattc
481caggaaacca tggaaacaat ggcaacaatg gagccactgg tcatgaagga gccaaaggtg
541agaagggcga caaaggtgac ctggggcctc gaggggagcg ggggcagcat ggccccaaag
601gagagaaggg ctacccgggg attccaccag aacttcagat tgcattcatg gcttctctgg
661caaccCACTT CAGCAATCAG AACAGTGGGA TTATCTTCAG CAGTGTTGAG ACCAACATTG
721GAAACTTCTT TGATGTCATG ACTGGTAGAT TTGGGGCCCC AGTATCAGGT GTGTATTTCT
781TCACCTTCAG CATGATGAAG CATGAGGATG TTGAGGAAGT GTATGTGTAC CTTATGCACA
841ATGGCAACAC AGTCTTCAGC ATGTACAGCT ATGAAATGAA GGGCAAATCA GATACATCCA
901GCAATCATGC TGTGCTGAAG CTAGCCAAAG GGGATGAGGT TTGGCTGCGA ATGGGCAATG
961GCGCTCTCCA TGGGGACCAC CAACGCTTCT CCACCTTTGC AGGATTCCTG CTCTTTGAAA
1021CTAAGTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1081TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1141CTTGGCTTTA TATATCTTGT GGAAAGGACG ACCTTCGTAC CCTAACCATA AATCCACGCG
1201TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)

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