Construct: ORF TRCN0000468090

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011862.1_s317c1
Derived from:
ccsbBroadEn_02423
DNA Barcode:
GACACATACGGTGCCATCACTAGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CD2BP2 (10421)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468090
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10421 CD2BP2 CD2 cytoplasmic tail bindin... NM_001243646.1 100% 100%
2 human 10421 CD2BP2 CD2 cytoplasmic tail bindin... NM_006110.3 100% 100%
3 mouse 70233 Cd2bp2 CD2 antigen (cytoplasmic ta... NM_001285905.1 86.8% 90.3% (many diffs)
4 mouse 70233 Cd2bp2 CD2 antigen (cytoplasmic ta... NM_001285906.1 86.8% 90.3% (many diffs)
5 mouse 70233 Cd2bp2 CD2 antigen (cytoplasmic ta... NM_001285907.1 86.8% 90.3% (many diffs)
6 mouse 70233 Cd2bp2 CD2 antigen (cytoplasmic ta... NM_027353.4 86.8% 90.3% (many diffs)
7 mouse 70233 Cd2bp2 CD2 antigen (cytoplasmic ta... XM_006508197.2 86.8% 90.3% (many diffs)
8 mouse 70233 Cd2bp2 CD2 antigen (cytoplasmic ta... XM_006508198.3 86.8% 90.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1089
ORF length:
1023
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc aaagaggaaa gtgaccttcc aaggcgtggg agatgaggag gatgaggatg
121aaatcattgt ccccaagaag aagctggtgg accctgtggc tgggtcaggg ggtcctggga
181gccgctttaa aggcaaacac tctttggata gcgatgagga ggaggatgat gatgatgggg
241ggtccagcaa atatgacatc ttggcctcag aggatgtaga aggtcaggag gcagccacac
301tccccagcga ggggggtgtt cggatcacac cctttaacct gcaggaggag atggaggaag
361gccactttga tgccgatggc aactacttcc tgaaccggga tgctcagatc cgagacagct
421ggctggacaa cattgactgg gtgaagatcc gggagcggcc acctggccag cgccaggcct
481cagactcgga ggaggaggac agcttgggcc agacctcaat gagtgcccaa gccctcttgg
541agggactttt ggagctccta ttgcctagag agacagtggc tggggcactg aggcgtctgg
601gggcccgagg aggaggcaaa gggagaaagg ggcctgggca acccagttcc cctcagcgcc
661tggaccggct ctccgggttg gccgaccaga tggtggcccg gggcaacctt ggtgtgtacc
721aggaaacaag ggaacggttg gctatgcgtc TGAAGGGTTT GGGGTGTCAG ACCCTAGGAC
781CCCACAATCC CACACCCCCA CCCTCCCTGG ACATGTTCGC TGAGGAGTTG GCGGAGGAGG
841AACTGGAGAC CCCAACCCCT ACCCAGAGAG GAGAAGCAGA GTCGCGGGGA GATGGTCTGG
901TGGATGTGAT GTGGGAATAT AAGTGGGAGA ACACGGGGGA TGCCGAGCTG TATGGGCCCT
961TCACCAGCGC CCAGATGCAG ACCTGGGTGA GTGAAGGCTA CTTCCCGGAC GGTGTTTATT
1021GCCGGAAGCT GGACCCCCCT GGTGGTCAGT TCTACAACTC CAAACGCATT GACTTTGACC
1081TCTACACCTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1141CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1201TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGACACA TACGGTGCCA TCACTAGAAC
1261GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)