Construct: ORF TRCN0000468440

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001413.1_s317c1
Derived from:
ccsbBroadEn_15512
DNA Barcode:
CTTAAATGGTTTCAAGAATTCAAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPM1 (4869)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468440
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4869 NPM1 nucleophosmin 1 NM_001355007.1 93% 93% 1_48del
2 human 4869 NPM1 nucleophosmin 1 NM_001355006.1 72.7% 72.7% 1_240del
3 human 4869 NPM1 nucleophosmin 1 NM_002520.6 72.7% 72.7% 1_240del
4 human 4869 NPM1 nucleophosmin 1 NM_001355010.1 72.4% 69% (many diffs)
5 human 4869 NPM1 nucleophosmin 1 NM_199185.3 62.9% 62.9% 1_240del;579_580ins87
6 human 4869 NPM1 nucleophosmin 1 NM_001037738.3 60.6% 60.2% (many diffs)
7 human 4869 NPM1 nucleophosmin 1 NM_001355009.2 50.7% 50.3% (many diffs)
8 human 4869 NPM1 nucleophosmin 1 NR_149149.1 35.4% 1_485del;641_642ins128;1000_1321del
9 human 29121 CLEC2D C-type lectin domain family... NR_036693.3 11.1% (many diffs)
10 mouse 18148 Npm1 nucleophosmin 1 NM_001252260.1 68.9% 70.9% (many diffs)
11 mouse 18148 Npm1 nucleophosmin 1 NM_008722.3 65.8% 67.7% (many diffs)
12 mouse 18148 Npm1 nucleophosmin 1 NM_001252261.1 54.4% 55.2% (many diffs)
13 mouse 102639044 LOC102639044 nucleophosmin pseudogene XR_389514.3 40% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
708
ORF length:
642
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc tgtacagcca acggtttccc ttgggggctt tgaaataaca ccaccagtgg
121tcttaaggtt gaagtgtggt tcagggccag tgcatattag tggacagcac ttagtagctg
181tggaggaaga tgcagagtca gaagatgaag aggaggagga tgtgaaactc ttaagtatat
241ctggaaagcg gTCTGCCCCT GGAGGTGGTA GCAAGGTTCC ACAGAAAAAA GTAAAACTTG
301CTGCTGATGA AGATGATGAC GATGATGATG AAGAGGATGA TGATGAAGAT GATGATGATG
361ATGATTTTGA TGATGAGGAA GCTGAAGAAA AAGCGCCAGT GAAGAAATCT ATACGAGATA
421CTCCAGCCAA AAATGCACAA AAGTCAAATC AGAATGGAAA AGACTCAAAA CCATCATCAA
481CACCAAGATC AAAAGGACAA GAATCCTTCA AGAAACAGGA AAAAACTCCT AAAACACCAA
541AAGGACCTAG TTCTGTAGAA GACATTAAAG CAAAAATGCA AGCAAGTATA GAAAAAGGTG
601GTTCTCTTCC CAAAGTGGAA GCCAAATTCA TCAATTATGT GAAGAATTGC TTCCGGATGA
661CTGACCAAGA GGCTATTCAA GATCTCTGGC AGTGGAGGAA GTCTCTTTAC CCAACTTTCT
721TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
781CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
841GTGGAAAGGA CGACTTAAAT GGTTTCAAGA ATTCAACACG CGTTAAGTCg acaatcaacc
901tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)