Construct: ORF TRCN0000468457
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004099.1_s317c1
- Derived from:
- ccsbBroadEn_02576
- DNA Barcode:
- TGCTGAATCACAGCTTAGTCACTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MLLT11 (10962)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468457
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10962 | MLLT11 | MLLT11 transcription factor... | NM_006818.4 | 100% | 100% | |
| 2 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | NM_019914.4 | 87.9% | 85.7% | (many diffs) |
| 3 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_006501800.3 | 87.9% | 85.7% | (many diffs) |
| 4 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319669.1 | 87.9% | 85.7% | (many diffs) |
| 5 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319670.1 | 87.9% | 85.7% | (many diffs) |
| 6 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319671.1 | 87.9% | 85.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 178
- ORF end:
- 448
- ORF length:
- 270
- Sequence:
-
1 AGACTGAAGT TAGGCCAGCT TGGCACTTGA TGTAATTCTC CTTGGAATTT GCCCTTTTTG 61 AGTTTGGATC TTGGTTCATT CTCAAGCCTC AGACAGTGGT TCAAAGTTTT TTTCTTCCAT 121 TTCAGGTGTC GTGAGGCTAG CATCGATTGA TCAACAAGTT TGTACAAAAA AGTTGGCATG 181 AGGGACCCTG TGAGTAGCCA GTACAGTTCC TTTCTTTTCT GGAGGATGCC CATCCCAGAA 241 CTGGATCTGT CGGAGCTGGA AGGCCTGGGT CTGTCAGATA CAGCCACCTA CAAGGTCAAA 301 GACAGCAGCG TTGGCAAAAT GATCGGGCAA GCAACTGCAG CAGACCAGGA GAAAAACCCT 361 GAAGGTGATG GCCTCCTTGA GTACAGCACC TTCAACTTCT GGAGAGCTCC CATTGCCAGC 421 ATCCACTCCT TCGAACTGGA CTTGCTCTAC CCAACTTTCT TGTACAAAGT GGTTGATATC 481 GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG 541 TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATGCTGAA 601 TCACAGCTTA GTCACTAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg 661 aaagatt