Construct: ORF TRCN0000468785

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008387.1_s317c1
Derived from:
ccsbBroadEn_00140
DNA Barcode:
CAAACTTCCGTCTGTAGTTACGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATP6V0A1 (535)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468785
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 535 ATP6V0A1 ATPase H+ transporting V0 s... NM_001130021.2 100% 100%
2 human 535 ATP6V0A1 ATPase H+ transporting V0 s... NM_005177.4 99.2% 99.2% 2111_2112insGCCTTCCGAGGACGAAGT
3 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_005257459.2 99.1% 99.1% 422_442del
4 human 535 ATP6V0A1 ATPase H+ transporting V0 s... NM_001130020.2 98.4% 98.4% 422_442del;2132_2133insGCCTTCCGAGGACGAAGT
5 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_017024769.1 94.9% 94.9% 2002_2003ins126
6 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_011524908.2 94.1% 94.1% 422_442del;2023_2024ins126
7 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_017024770.1 92.7% 88.6% 2248_2249ins172;2340_2349delTGAGTCCCTG
8 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_017024771.1 92% 87.8% 2111_2112insGCCTTCCGAGGACGAAGT;2230_2231ins172;2322_2331delTGAGTCCCTG
9 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_005257461.2 92% 87.8% 422_442del;2269_2270ins172;2361_2370delTGAGTCCCTG
10 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_005257463.3 91.3% 87.1% (many diffs)
11 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_017024772.2 69.4% 69.4% 0_1ins768
12 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_017024773.2 69.4% 69.4% 0_1ins768
13 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XM_017024774.2 68.6% 68.6% 0_1ins768;1343_1344insGCCTTCCGAGGACGAAGT
14 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_934484.3 64.7% (many diffs)
15 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_001752539.1 64.3% 1_133del;2553_2730del;2823_3904del
16 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_934483.3 63.9% (many diffs)
17 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_001752540.2 59.5% (many diffs)
18 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_002958027.1 58.1% (many diffs)
19 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_001752538.2 57.8% (many diffs)
20 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_002958026.1 56.4% (many diffs)
21 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_002958029.1 56.2% (many diffs)
22 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_002958025.1 56.1% (many diffs)
23 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_002958028.1 55.6% (many diffs)
24 human 535 ATP6V0A1 ATPase H+ transporting V0 s... XR_002958030.1 52.7% (many diffs)
25 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001362638.1 88.9% 96% (many diffs)
26 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_016920.4 88.9% 96% (many diffs)
27 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XM_006532054.2 88.8% 95.9% (many diffs)
28 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001243050.2 88.3% 95.4% (many diffs)
29 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001362637.1 88.2% 95.2% (many diffs)
30 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XM_030245491.1 88.2% 95.3% (many diffs)
31 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001243051.2 87.5% 94.6% (many diffs)
32 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001362636.1 86.4% 93.2% (many diffs)
33 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XM_006532050.3 86.3% 93.1% (many diffs)
34 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XM_006532049.3 85.7% 92.5% (many diffs)
35 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XM_006532051.3 85% 91.9% (many diffs)
36 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XM_030245492.1 84.1% 91.2% (many diffs)
37 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XM_006532055.3 83.4% 90.5% (many diffs)
38 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001362639.1 82.4% 88.9% (many diffs)
39 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001243049.2 82.3% 88.7% (many diffs)
40 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XR_388335.2 73.2% (many diffs)
41 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001362640.1 71.8% 76.2% (many diffs)
42 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... XR_388336.2 54% (many diffs)
43 mouse 11975 Atp6v0a1 ATPase, H+ transporting, ly... NM_001362641.1 25% 25.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2577
ORF length:
2511
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg ggagcttttc cggagtgaag aaatgacact ggcccagctt tttctacagt
121cagaggctgc ttattgttgt gtcagtgaat taggagaact tggaaaggtt cagtttcgtg
181acttaaatcc agatgtgaat gttttccaac ggaaatttgt gaatgaagtt agaagatgtg
241aagaaatgga tcgaaagctt cgatttgttg agaaagagat aagaaaagct aacattccga
301ttatggacac cggtgaaaac ccagaggttc ccttcccccg ggacatgatt gacttagagg
361ccaattttga gaagattgaa aatgaactga aggaaatcaa cacaaaccag gaagctctga
421agagaaactt cctggaactg accgaattaa aatttatact tcgcaaaact cagcaatttt
481ttgatgagat ggcggatcca gacttgttgg aagagtcctc atccctcttg gagccaagtg
541agatgggaag aggcactcct ttaagacttg gcttcgtggc tggtgtcatt aaccgggagc
601gcatccctac ttttgagcgc atgctttggc gggtatgccg gggaaatgtg ttcctgcgac
661aggctgaaat cgagaacccc ctggaggatc ctgtgactgg cgactacgtg cacaagtctg
721tgtttatcat tttcttccaa ggcgatcagc tgaaaaacag agtcaagaaa atctgtgaag
781ggttccgagc ctcactctat ccctgtcctg agacaccaca ggagaggaag gaaatggctt
841ctggagtgaa taccaggatt gatgatctcc aaatggttct gaatcaaacg gaggatcacc
901gccagagggt tctgcaggca gctgctaaga acatccgtgt ctggttcatc aaagtgcgga
961agatgaaggc catctatcac accctgaacc tgtgcaacat agatgtgact cagaaatgct
1021tgattgcaga ggtctggtgc cctgtcaccg accttgactc catccagttt gcactcagaa
1081ggggcacgga acacagtggt tccactgtac cttccatttt gaacaggatg cagacaaacc
1141agactccccc aacctataac aaaaccaaca agtttaccta tggctttcag aacatagtag
1201atgcttatgg aattggaact taccgagaga taaatccagc tccgtatact attatcacgt
1261tcccttttct atttgctgtg atgtttggag acttcggtca tggcatttta atgacccttt
1321ttgctgtgtg gatggtactg agggagagcc ggatcctttc ccagaagaat gagaatgaga
1381tgtttagcac tgtgttcagt ggtcgataca ttattttatt gatgggtgtg ttctccatgt
1441acactggcct catctacaat gattgctttt ccaagtctct taatatcttt gggtcatcct
1501ggagtgtacg gccgatgttt acttataatt ggactgaaga gacgcttcgg gggaaccctg
1561ttctacagct gaacccagcc ctccctggag tgtttggtgg accataccct tttggcattg
1621atccaatttg gaacattgct accaataaac tgacgttctt gaactccttt aagatgaaga
1681tgtctgttat ccttggtatc atccatatgc tgtttggagt cagcctgagt ctgttcaacc
1741atatctattt caagaagccc ctgaatatct actttggatt tattcctgaa ataatcttca
1801tgacctcttt gtttggctat ttggttatcc ttatttttta caagtggacg gcctatgatg
1861ctcatacctc tgagaatgca ccaagccttc tgatccattt cataaacatg ttcctctttt
1921cctacccaga gtctggttat tcaatgttgt attctggaca gaaaggaatt cagtgtttcc
1981tggtagtggt tgcactactg tgtgtacctt ggatgctgct gtttaaacca ttggtccttc
2041gccgtcagta tttgaggaga aagcatttgg gaactctcaa ctttggtggg atcagggtgg
2101gcaacggacc gacagaggag gatgctgaga ttattcagca tgaccagctc tccacccact
2161cagaggacgc agacgagcct tccgaggacg aagtgtttga ctttggggac accatggtcc
2221accaggccat ccacaccatc gagtactgcc tgggctgcat ctccaacact gcctcctact
2281tgcggctctg ggccctcagc ctcgctcatg cgcagctgtc tgaggtgctt tggaccatgg
2341tgatccacat cggcctgagc gtgaagagct tggcgggagg tttggtgctg ttcttcttct
2401tcactgcctt tgccaccctg accgtggcca tcctcctgat catggagggc ctctcggcct
2461ttctccacgc actgcgctta cactgggttg agttccagaa taaattctac agcgggaccg
2521gtttcaagtt cTTACCCTTC TCCTTCGAGC ATATTCGGGA AGGGAAGTTT GAAGAGTGCC
2581CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
2641TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
2701ATATATCTTG TGGAAAGGAC GACAAACTTC CGTCTGTAGT TACGTCACGC GTTAAGTCga
2761caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)