Construct: ORF TRCN0000468814
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016861.1_s317c1
- Derived from:
- ccsbBroadEn_15070
- DNA Barcode:
- TATTCTCATTTCATTCAAAGCAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC25A39 (51629)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468814
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NM_016016.3 | 99.3% | 99.1% | 19_20delGCinsCT;23_24delGCinsAG;331_333delGGCinsCTG |
| 2 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NM_001321241.1 | 97.6% | 97.4% | (many diffs) |
| 3 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NM_001143780.3 | 97.1% | 96.6% | (many diffs) |
| 4 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XM_011524880.3 | 95.5% | 95% | (many diffs) |
| 5 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NM_001321240.1 | 95% | 94.5% | (many diffs) |
| 6 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XM_011524882.3 | 93.4% | 92.9% | (many diffs) |
| 7 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XM_024450797.1 | 78.5% | 78.3% | (many diffs) |
| 8 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XM_024450796.1 | 77.4% | 77.3% | (many diffs) |
| 9 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NM_001366726.1 | 73.5% | 63.2% | 0_1ins211;89_90ins68 |
| 10 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XM_011524883.3 | 72.2% | 62.2% | 0_1ins211;89_90ins68;387_404del |
| 11 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XM_011524884.1 | 72.2% | 62.2% | 0_1ins211;89_90ins68;387_404del |
| 12 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NR_159402.1 | 60.1% | (many diffs) | |
| 13 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NR_159401.1 | 59.4% | (many diffs) | |
| 14 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NR_159403.1 | 58.6% | (many diffs) | |
| 15 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NR_159404.1 | 56.9% | (many diffs) | |
| 16 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XR_002958020.1 | 56.1% | (many diffs) | |
| 17 | human | 51629 | SLC25A39 | solute carrier family 25 me... | NR_159405.1 | 53.2% | (many diffs) | |
| 18 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XR_002958018.1 | 50.3% | (many diffs) | |
| 19 | human | 51629 | SLC25A39 | solute carrier family 25 me... | XR_002958019.1 | 34.2% | (many diffs) | |
| 20 | mouse | 68066 | Slc25a39 | solute carrier family 25, m... | NM_026542.3 | 83.8% | 86.3% | (many diffs) |
| 21 | mouse | 68066 | Slc25a39 | solute carrier family 25, m... | XM_006534034.1 | 83.8% | 86.3% | (many diffs) |
| 22 | mouse | 68066 | Slc25a39 | solute carrier family 25, m... | XM_006534035.1 | 83.8% | 86.3% | (many diffs) |
| 23 | mouse | 68066 | Slc25a39 | solute carrier family 25, m... | XM_006534036.3 | 77.7% | 79.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1119
- ORF length:
- 1053
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc tgaccaggac cctctggaga tcagccccct ccagcaaatg gtggcctcag 121 gcaccggggc tgtggttacc tctctcttca tgacacccct ggacgtggtg aaggttcgcc 181 tgcagtctca gcggccctcc atggccagcg agctgatgcc ttcctccaga ctgtggagcc 241 tctcctatac caaatggaag tgcctcctgt attgcaatgg tgtcctggag cctctgtacc 301 tgtgcccaaa tggtgcccgc tgtgccacct ggtttcaaga ccctacccgc ttcactggca 361 ccatggatgc cttcgtgaag atcgtgaggc acgagctgac caggaccctc tggagcggcc 421 tccccgccac cctggtgatg actgtgccag ctaccgccat ctacttcact gcctatgacc 481 aactgaaggc cttcctgtgt ggtcgagccc tgacctctga cctctacgca cccatggtgg 541 ctggcgcgct ggcccgcctg ggcaccgtga ctgtgatcag ccccctggag cttatgcgga 601 caaagctgca ggctcagcat gtgtcgtacc gggagctggg tgcctgtgtt cgaactgcag 661 tggctcaggg tggctggcgc tcactgtggc tgggctgggg ccccactgcc cttcgagatg 721 tgcccttcTC AGCCCTGTAC TGGTTCAACT ATGAGCTGGT GAAGAGCTGG CTCAATGGGT 781 TCAGGCCGAA GGACCAGACT TCTGTGGGCA TGAGCTTTGT GGCTGGTGGC ATCTCAGGGA 841 CGGTGGCTGC AGTGCTGACT CTACCCTTTG ACGTGGTAAA GACCCAACGC CAGGTCGCTC 901 TGGGAGCGAT GGAGGCTGTG AGAGTGAACC CCCTGCATGT GGACTCCACC TGGCTGCTGC 961 TGCGGAGGAT CCGGGCCGAG TCGGGCACCA AGGGACTCTT TGCAGGCTTC CTTCCTCGGA 1021 TCATCAAGGC TGCCCCCTCC TGTGCCATCA TGATCAGCAC CTATGAGTTC GGCAAAAGCT 1081 TCTTCCAGAG GCTGAACCAG GACCGGCTTC TGGGCGGCTG CCCAACTTTC TTGTACAAAG 1141 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1201 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1261 ACGATATTCT CATTTCATTC AAAGCAATAC GCGTTAAGTC gacaatcaac ctctggatta 1321 caaaatttgt gaaagatt