Construct: ORF TRCN0000468963

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008646.1_s317c1
Derived from:
ccsbBroadEn_02333
DNA Barcode:
CATCACGGCCGAGAGATTGTAAAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABI2 (10152)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468963
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10152 ABI2 abl interactor 2 NM_005759.6 100% 100%
2 human 10152 ABI2 abl interactor 2 XM_017003125.2 99.7% 99.7% 704_705insCAG
3 human 10152 ABI2 abl interactor 2 XM_017003126.1 99.5% 99.3% 1078_1079insTTTCAG
4 human 10152 ABI2 abl interactor 2 XM_006712180.3 98.7% 98.7% 460_477del
5 human 10152 ABI2 abl interactor 2 XM_017003124.2 94.9% 91.6% (many diffs)
6 human 10152 ABI2 abl interactor 2 XM_017003127.1 94.7% 91.4% (many diffs)
7 human 10152 ABI2 abl interactor 2 XM_005246226.2 93.8% 93.8% 991_992ins87
8 human 10152 ABI2 abl interactor 2 XM_017003135.1 93.6% 93.6% 704_705insCAG;988_989ins87
9 human 10152 ABI2 abl interactor 2 XM_006712181.3 92.7% 92.7% 460_477del;1009_1010ins87
10 human 10152 ABI2 abl interactor 2 XM_006712182.3 92.5% 92.5% 460_477del;722_723insCAG;1006_1007ins87
11 human 10152 ABI2 abl interactor 2 XM_017003141.1 89.6% 89.6% 559_560ins147
12 human 10152 ABI2 abl interactor 2 XM_017003142.2 89.4% 89.4% 559_560ins150
13 human 10152 ABI2 abl interactor 2 XM_017003134.2 88.9% 85.7% (many diffs)
14 human 10152 ABI2 abl interactor 2 XM_017003136.1 88.7% 85.5% (many diffs)
15 human 10152 ABI2 abl interactor 2 XM_005246218.3 88.6% 88.6% 830_1012del
16 human 10152 ABI2 abl interactor 2 XM_017003138.2 88.3% 88.3% 460_477del;577_578ins150
17 human 10152 ABI2 abl interactor 2 XM_017003132.2 87.8% 84.7% (many diffs)
18 human 10152 ABI2 abl interactor 2 XM_005246217.2 87.6% 87.6% 460_477del;848_1030del
19 human 10152 ABI2 abl interactor 2 XM_017003118.1 87.4% 87.4% 460_477del;722_723insCAG;845_1027del
20 human 10152 ABI2 abl interactor 2 XM_017003119.2 87.2% 87% 460_477del;848_1030del;1279_1280insTTTCAG
21 human 10152 ABI2 abl interactor 2 XM_006712186.3 83.5% 83.5% 559_560ins147;844_845ins87
22 human 10152 ABI2 abl interactor 2 XM_006712174.3 83.3% 80.6% (many diffs)
23 human 10152 ABI2 abl interactor 2 XM_017003145.1 83.3% 83.3% 559_560ins150;841_842ins87
24 human 10152 ABI2 abl interactor 2 XM_017003120.2 83.2% 80.4% (many diffs)
25 human 10152 ABI2 abl interactor 2 NM_001282926.2 83.2% 83.2% 830_1012del;1174_1175ins87
26 human 10152 ABI2 abl interactor 2 XM_017003144.2 82.5% 82.5% 460_477del;577_578ins147;862_863ins87
27 human 10152 ABI2 abl interactor 2 NM_001282925.2 82.2% 82.2% 460_477del;848_1030del;1192_1193ins87
28 human 10152 ABI2 abl interactor 2 XM_017003121.1 82.1% 82.1% (many diffs)
29 human 10152 ABI2 abl interactor 2 XM_017003139.2 80.8% 80.6% 0_1ins211;75_150del
30 human 10152 ABI2 abl interactor 2 XM_017003140.2 80.6% 80.4% 0_1ins211;75_150del;569_570insCAG
31 human 10152 ABI2 abl interactor 2 XM_017003137.2 79.7% 79.4% (many diffs)
32 human 10152 ABI2 abl interactor 2 XM_005246221.3 79.4% 79.4% 559_560ins147;683_865del
33 human 10152 ABI2 abl interactor 2 XM_017003123.2 79.2% 79.2% 559_560ins150;680_862del
34 human 10152 ABI2 abl interactor 2 XM_017003146.1 78.8% 75.7% (many diffs)
35 human 10152 ABI2 abl interactor 2 XM_006712179.2 78.5% 78.5% 460_477del;577_578ins147;701_883del
36 human 10152 ABI2 abl interactor 2 XM_011510472.2 78.4% 78.4% 460_477del;577_578ins150;698_880del
37 human 10152 ABI2 abl interactor 2 XM_017003122.1 78.2% 78% (many diffs)
38 human 10152 ABI2 abl interactor 2 NM_001282932.1 77.8% 74.3% (many diffs)
39 human 10152 ABI2 abl interactor 2 NM_001282927.1 75% 74.5% 0_1ins211;75_150del;856_857ins87
40 human 10152 ABI2 abl interactor 2 XM_006712185.1 75% 74.5% 0_1ins211;75_150del;856_857ins87
41 human 10152 ABI2 abl interactor 2 XM_005246225.3 74% 74% 559_560ins147;683_865del;1027_1028ins87
42 human 10152 ABI2 abl interactor 2 XM_017003131.2 73.8% 73.8% 559_560ins150;680_862del;1024_1025ins87
43 human 10152 ABI2 abl interactor 2 XM_017003129.1 73.2% 73.2% (many diffs)
44 human 10152 ABI2 abl interactor 2 XM_017003130.1 73% 73% (many diffs)
45 human 10152 ABI2 abl interactor 2 XM_006712177.3 71.3% 70.7% (many diffs)
46 human 10152 ABI2 abl interactor 2 XM_024452511.1 71.3% 70.7% (many diffs)
47 human 10152 ABI2 abl interactor 2 XM_017003128.1 66.2% 65.3% (many diffs)
48 human 10152 ABI2 abl interactor 2 XM_017003133.2 62.6% 61.6% (many diffs)
49 human 10152 ABI2 abl interactor 2 XM_011510473.3 61.8% 60.4% (many diffs)
50 human 10152 ABI2 abl interactor 2 XM_017003143.1 57.4% 56.1% (many diffs)
51 human 10152 ABI2 abl interactor 2 XR_001738583.1 57.3% (many diffs)
52 human 10152 ABI2 abl interactor 2 XR_001738584.2 20.8% (many diffs)
53 mouse 329165 Abi2 abl-interactor 2 XM_006496081.3 94% 99.3% (many diffs)
54 mouse 329165 Abi2 abl-interactor 2 XM_006496080.3 92.8% 98.1% (many diffs)
55 mouse 329165 Abi2 abl-interactor 2 NM_198127.2 88% 93.2% (many diffs)
56 mouse 329165 Abi2 abl-interactor 2 XM_006496085.3 86.9% 92% (many diffs)
57 mouse 329165 Abi2 abl-interactor 2 XM_017321249.1 83.7% 89% (many diffs)
58 mouse 329165 Abi2 abl-interactor 2 XM_006496076.3 83.3% 88% (many diffs)
59 mouse 329165 Abi2 abl-interactor 2 XM_006496075.3 82.4% 87% (many diffs)
60 mouse 329165 Abi2 abl-interactor 2 XM_017321240.1 82.2% 86.9% (many diffs)
61 mouse 329165 Abi2 abl-interactor 2 NM_001198571.1 82.1% 87% (many diffs)
62 mouse 329165 Abi2 abl-interactor 2 XM_006496078.3 77.9% 82.6% (many diffs)
63 mouse 329165 Abi2 abl-interactor 2 XM_017321245.1 77.7% 82.4% (many diffs)
64 mouse 329165 Abi2 abl-interactor 2 XM_006496077.3 77.1% 81.7% (many diffs)
65 mouse 329165 Abi2 abl-interactor 2 XM_017321244.1 76.9% 81.5% (many diffs)
66 mouse 329165 Abi2 abl-interactor 2 XM_017321250.1 76.7% 81.9% (many diffs)
67 mouse 329165 Abi2 abl-interactor 2 XM_006496079.3 73.4% 78% (many diffs)
68 mouse 329165 Abi2 abl-interactor 2 XM_011238539.2 73.2% 77.8% (many diffs)
69 mouse 329165 Abi2 abl-interactor 2 NM_001198570.1 72.8% 76.7% (many diffs)
70 mouse 329165 Abi2 abl-interactor 2 XM_006496084.3 68.9% 73.5% (many diffs)
71 mouse 329165 Abi2 abl-interactor 2 XM_017321246.1 68.1% 72.6% (many diffs)
72 mouse 329165 Abi2 abl-interactor 2 XM_017321247.1 67.9% 72.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1491
ORF length:
1425
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggagctgcag atgctgctgg aagaggaaat cccggggggc cgccgggccc
121tcttcgacag ctacacaaat ctggaacggg tggccgatta ctgcgagaac aactacatac
181agtcagcaga taagcagaga gccctagaag aaaccaaagc ctacaccacc caatccttag
241caagtgttgc ctatctgata aacaccttgg ccaacaatgt cctgcagatg ctggatatcc
301aggcatccca gctacgaagg atggaatctt caatcaatca tatttcacaa acagttgata
361ttcataaaga gaaagttgca agaagagaaa ttggtatttt gactaccaat aaaaacactt
421caaggacaca taagattatt gctccagcca accttgaacg accagttcgt tatattagaa
481aacctattga ctatacaatt ctagatgata ttggacatgg agtaaaggtg agtacccaga
541acatgaagat gggtgggctg ccgcgtacaa cacctccaac tcagaagccc cctagtcccc
601ctatgtcagg gaaagggaca cttgggcggc actcccccta tcgcacactg gagccagtgc
661gtcctccagt ggtaccaaat gattacgtac ctagcccaac ccgtaatatg gctccctcgc
721agcagagccc tgtgaggaca gcttctgtga atcaaagaaa tcgaacttac agcagcagtg
781ggagtagtgg agggagccac ccaagtagtc ggagcagcag tcgagagaac agtggaagtg
841gtagtgtggg ggttcctatt gctgttccta ctccatctcc tcccagtgtc tttccaggtc
901atcctgtaca gttctacagc atgaataggc ctgcctctcg ccatactccc ccaacaatag
961ggggctcgtt gccctataga cgccctcctt ccattacttc acaaacaagc cttcagaatc
1021agatgaatgg aggacctttt tatagccaga atccagtatc tcttgctcct cctcctccct
1081ccatcctaca ggtaactccT CAGTTACCTT TAATGGGATT TGTGGCCAGA GTCCAAGAAA
1141ATATTTCAGA TACACCACCT CCACCGCCAC CTGTGGAAGA ACCAGTCTTT GATGAGTCTC
1201CCCCACCTCC TCCTCCTCCA GAAGATTACG AAGAGGAGGA AGCTGCTGTG GTTGAGTATA
1261GTGATCCTTA TGCTGAAGAG GACCCACCGT GGGCTCCACG TTCTTACTTG GAAAAGGTTG
1321TGGCAATTTA TGACTATACA AAAGACAAGG AAGATGAGCT GTCCTTTCAG GAAGGAGCCA
1381TTATTTATGT CATCAAGAAG AATGACGATG GTTGGTATGA GGGAGTTATG AATGGAGTGA
1441CTGGGCTTTT TCCTGGGAAT TACGTTGAGT CTATCATGCA TTATTCTGAG TACCCAACTT
1501TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1561CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1621CTTGTGGAAA GGACGACATC ACGGCCGAGA GATTGTAAAG ACGCGTTAAG TCgacaatca
1681acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)