Construct: ORF TRCN0000468993

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014947.1_s317c1
Derived from:
ccsbBroadEn_16081
DNA Barcode:
CATGCTATAGCATTGACGGAGATG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAB3IP (117177)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468993
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 117177 RAB3IP RAB3A interacting protein NM_001024647.3 100% 100%
2 human 117177 RAB3IP RAB3A interacting protein NM_001278402.1 100% 100%
3 human 117177 RAB3IP RAB3A interacting protein XM_017018777.2 100% 100%
4 human 117177 RAB3IP RAB3A interacting protein XM_017018774.2 98% 98% 1_15del
5 human 117177 RAB3IP RAB3A interacting protein XM_024448832.1 98% 98% 1_15del
6 human 117177 RAB3IP RAB3A interacting protein NM_022456.5 55.2% 55.2% 1_618del
7 human 117177 RAB3IP RAB3A interacting protein XM_017018773.1 55.2% 55.2% 1_618del
8 human 117177 RAB3IP RAB3A interacting protein NM_175623.4 53.3% 53.3% 1_666del
9 human 117177 RAB3IP RAB3A interacting protein XM_006719226.3 49.8% 49.8% 1_768del
10 human 117177 RAB3IP RAB3A interacting protein NM_175624.4 41% 36.5% 1_618del;1130_1131ins100;1185_1186ins95
11 human 117177 RAB3IP RAB3A interacting protein NM_175625.4 39.7% 35.3% 1_666del;1178_1179ins100;1233_1234ins95
12 human 117177 RAB3IP RAB3A interacting protein XM_006719227.3 37% 33% 1_768del;1280_1281ins100;1335_1336ins95
13 human 117177 RAB3IP RAB3A interacting protein XR_944488.2 8.4% 1_785del;1179_1180insGTGAG;1543_8944del
14 human 117177 RAB3IP RAB3A interacting protein XR_944491.2 8.3% 1_785del;1055_1221del;1715_9116del
15 human 117177 RAB3IP RAB3A interacting protein XR_001748572.2 8.1% 1_815del;1209_1210insGTGAG;1573_9305del
16 human 117177 RAB3IP RAB3A interacting protein XR_944489.2 7.3% (many diffs)
17 human 117177 RAB3IP RAB3A interacting protein XR_944490.2 7.2% 1_785del;1184_1185ins113;1435_8836del
18 human 117177 RAB3IP RAB3A interacting protein XR_944487.2 7.1% 1_785del;1176_1177ins118;1430_8831del
19 human 117177 RAB3IP RAB3A interacting protein XR_944492.2 5.8% 1_785del;1055_1056ins242;1306_8707del
20 human 117177 RAB3IP RAB3A interacting protein NR_103519.2 5.5% 1_815del;1085_1086ins242;1336_9091del
21 human 117177 RAB3IP RAB3A interacting protein NR_103520.2 5.3% 1_1132del;1402_1403ins242;1653_9408del
22 mouse 216363 Rab3ip RAB3A interacting protein XM_006513548.3 87% 94.8% (many diffs)
23 mouse 216363 Rab3ip RAB3A interacting protein XM_017313908.1 87% 94.8% (many diffs)
24 mouse 216363 Rab3ip RAB3A interacting protein XM_006513547.3 75.9% 82.8% (many diffs)
25 mouse 216363 Rab3ip RAB3A interacting protein NM_001003950.2 51.6% 56.3% (many diffs)
26 mouse 216363 Rab3ip RAB3A interacting protein XM_006513544.1 48% 52.3% (many diffs)
27 mouse 216363 Rab3ip RAB3A interacting protein XM_006513545.3 48% 52.3% (many diffs)
28 mouse 216363 Rab3ip RAB3A interacting protein XM_006513546.3 48% 52.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
828
ORF length:
762
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gagagaagca aatatcaagc aggcaacagc agaaaaacag ctaaaagaag
121cacaaggaaa aattgatgta cttcaagctg aagtagctgc attgaagaca cttgtattgt
181ccagttctcc aacatcacct acgcaggagc ctttgccagg tggaaagaca ccttttaaaa
241aggggcatac aagaaataaa agcacaagca gtgctatgag tggcagtcat caggaccTCA
301GTGTGATACA GCCAATTGTA AAAGACTGCA AAGAGGCTGA CTTATCCTTG TATAATGAAT
361TCCGATTGTG GAAGGATGAG CCCACAATGG ACAGGACGTG TCCTTTCTTA GACAAAATCT
421ACCAGGAAGA TATCTTTCCA TGTTTAACAT TCTCAAAAAG TGAGTTGGCT TCAGCTGTTC
481TGGAGGCTGT GGAAAACAAT ACTCTAAGCA TTGAACCAGT GGGATTACAA CCTATCCGGT
541TTGTGAAAGC TTCTGCAGTT GAATGCGGAG GACCAAAAAA ATGTGCTCTC ACTGGCCAGA
601GTAAGTCCTG TAAACACAGA ATTAAATTAG GGGACTCAAG CAACTATTAT TATATTTCTC
661CTTTTTGCAG ATACAGGATC ACTTCTGTAT GTAACTTTTT TACATACATT CGATACATTC
721AGCAGGGACT CGTGAAACAG CAGGATGTTG ATCAGATGTT TTGGGAGGTT ATGCAGTTGA
781GAAAAGAGAT GTCATTGGCA AAGCTGGGTT ATTTCAAAGA GGAACTCTGC CCAACTTTCT
841TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
901CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
961GTGGAAAGGA CGACATGCTA TAGCATTGAC GGAGATGACG CGTTAAGTCg acaatcaacc
1021tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)