Construct: ORF TRCN0000469078

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010627.1_s317c1
Derived from:
ccsbBroadEn_07867
DNA Barcode:
ATAGACGTCGAATAATTACGACAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TUT4 (23318)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469078
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23318 TUT4 terminal uridylyl transfera... NM_001009881.3 99.9% 100% 315G>A
2 human 23318 TUT4 terminal uridylyl transfera... NM_015269.2 99.9% 99.9% 315G>A;3936_3937insAGC
3 human 23318 TUT4 terminal uridylyl transfera... XM_005270680.3 99.6% 99.6% 315G>A;3936_3937insAGCAGTTTACTGTTT
4 human 23318 TUT4 terminal uridylyl transfera... XM_005270676.2 98.6% 97.7% (many diffs)
5 human 23318 TUT4 terminal uridylyl transfera... XM_006710498.2 98.6% 97.7% (many diffs)
6 human 23318 TUT4 terminal uridylyl transfera... XM_006710499.3 98.6% 97.7% (many diffs)
7 human 23318 TUT4 terminal uridylyl transfera... XM_011541097.1 98.6% 97.7% (many diffs)
8 human 23318 TUT4 terminal uridylyl transfera... XM_005270678.2 98.5% 97.7% (many diffs)
9 human 23318 TUT4 terminal uridylyl transfera... XM_005270679.2 98.3% 97.4% (many diffs)
10 human 23318 TUT4 terminal uridylyl transfera... XM_017000804.2 98% 98% 315G>A;1513_1514ins81;3855_3856insAGCAGTTTACTGTTT
11 human 23318 TUT4 terminal uridylyl transfera... XM_017000805.2 97.3% 97.3% 315G>A;3319_3320ins114;3822_3823insAGCAGTTTACTGTTT
12 human 23318 TUT4 terminal uridylyl transfera... XM_011541098.1 96.9% 96.1% (many diffs)
13 human 23318 TUT4 terminal uridylyl transfera... XM_017000803.1 96.6% 95.8% (many diffs)
14 human 23318 TUT4 terminal uridylyl transfera... XM_005270681.2 96.3% 95.4% (many diffs)
15 human 23318 TUT4 terminal uridylyl transfera... XM_017000807.2 95.3% 95.3% 315G>A;1635_1636ins213;3723_3724insAGCAGTTTACTGTTT
16 human 23318 TUT4 terminal uridylyl transfera... XM_006710500.1 94.3% 93.5% (many diffs)
17 human 23318 TUT4 terminal uridylyl transfera... XM_017000806.1 94% 93.2% (many diffs)
18 human 23318 TUT4 terminal uridylyl transfera... XM_017000809.2 93.2% 93.2% 315G>A;1515_1516ins333
19 human 23318 TUT4 terminal uridylyl transfera... XM_017000810.2 92.9% 92.9% 315G>A;1515_1516ins333;3603_3604insAGCAGTTTACTGTTT
20 human 23318 TUT4 terminal uridylyl transfera... XM_011541099.1 92.7% 91.8% (many diffs)
21 human 23318 TUT4 terminal uridylyl transfera... XM_017000811.2 92.5% 92.5% 315G>A;3065_3066ins366
22 human 23318 TUT4 terminal uridylyl transfera... XM_017000812.2 92.5% 92.5% 315G>A;3065_3066ins366;3570_3571insAGC
23 human 23318 TUT4 terminal uridylyl transfera... XM_017000813.2 92.2% 92.2% 315G>A;3065_3066ins366;3570_3571insAGCAGTTTACTGTTT
24 human 23318 TUT4 terminal uridylyl transfera... XM_005270682.2 91.9% 91.1% (many diffs)
25 human 23318 TUT4 terminal uridylyl transfera... XM_017000808.1 91.6% 90.7% (many diffs)
26 human 23318 TUT4 terminal uridylyl transfera... XM_005270683.2 91.2% 90.4% (many diffs)
27 human 23318 TUT4 terminal uridylyl transfera... XM_017000814.2 85.8% 85.8% 315G>A;1515_1516ins333;2732_2733ins366
28 human 23318 TUT4 terminal uridylyl transfera... XR_001737073.1 81.5% (many diffs)
29 human 23318 TUT4 terminal uridylyl transfera... XM_011541100.2 78.2% 77% (many diffs)
30 human 23318 TUT4 terminal uridylyl transfera... XR_001737074.2 74.4% (many diffs)
31 human 23318 TUT4 terminal uridylyl transfera... XR_002959846.1 67% (many diffs)
32 human 23318 TUT4 terminal uridylyl transfera... XM_011541101.2 62.8% 60.6% (many diffs)
33 human 23318 TUT4 terminal uridylyl transfera... XM_017000815.2 62.4% 60.2% (many diffs)
34 human 23318 TUT4 terminal uridylyl transfera... XM_017000816.1 61.8% 60.7% (many diffs)
35 human 23318 TUT4 terminal uridylyl transfera... XM_017000817.1 59.1% 58% (many diffs)
36 human 23318 TUT4 terminal uridylyl transfera... XM_017000818.1 56.7% 55.6% (many diffs)
37 mouse 230594 Tut4 terminal uridylyl transfera... XM_017320139.2 87% 86.6% (many diffs)
38 mouse 230594 Tut4 terminal uridylyl transfera... XM_006502978.4 87% 86.5% (many diffs)
39 mouse 230594 Tut4 terminal uridylyl transfera... XM_006502980.3 87% 86.5% (many diffs)
40 mouse 230594 Tut4 terminal uridylyl transfera... XM_017320138.2 86.9% 86.5% (many diffs)
41 mouse 230594 Tut4 terminal uridylyl transfera... XM_017320140.2 86.7% 86.3% (many diffs)
42 mouse 230594 Tut4 terminal uridylyl transfera... NM_175472.3 86.7% 86.2% (many diffs)
43 mouse 230594 Tut4 terminal uridylyl transfera... XM_030253437.1 86.7% 86.2% (many diffs)
44 mouse 230594 Tut4 terminal uridylyl transfera... XM_017320141.2 86% 85.5% (many diffs)
45 mouse 230594 Tut4 terminal uridylyl transfera... XM_006502983.4 54.2% 51.7% (many diffs)
46 mouse 230594 Tut4 terminal uridylyl transfera... XM_006502984.4 47.8% 44.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
5004
ORF length:
4935
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaagagtct aaaaccttaa aaagtgaaaa tcatgaacca aagaagaatg
121ttatttgtga agaaagcaaa gcagttcaag ttataggtaa tcaaacattg aaagctagaa
181atgataaatc cgtaaaagaa attgagaaca gctctccaaa taggaatagt agtaaaaaaa
241ataagcaaaa tgatatttgt atagaaaaaa cagaagttaa atcatgtaaa gtaaatgctg
301ccaaccttcc aggtcctaaa gatttggggt tagtccttcg agatcaaagt cattgcaaag
361caaaaaaatt tcctaattca ccagtgaaag ccgaaaaggc aaccatttca caggcaaaat
421cagaaaaggc aaccagttta caggcaaaag cagaaaaatc accaaagtca cctaattcag
481tgaaagcaga aaaagcatcc agttatcaga tgaagtcaga aaaagtacca agttcaccag
541cagaagcaga aaagggaccc agtttactgt tgaaagacat gagacagaag acagaattac
601aacagattgg aaaaaaaatt ccaagctcct ttacttctgt ggacaaagtg aatattgaag
661ctgtaggggg agaaaaatgt gctctgcaaa actcaccacg atctcagaag caacagacat
721gtacagataa tactggtgat tctgatgata gtgcttcagg aattgaagac gtatcggacg
781atttaagtaa aatgaagaat gatgaatcta ataaagaaaa ttcttcagag atggactact
841tagaaaatgc cactgtgata gatgaatctg cattgacacc tgagcagagg ctggggttga
901aacaagcaga agaacgctta gaaagagatc acatctttcg acttgaaaaa cgatcaccag
961aatataccaa ttgtcggtat ctatgcaaac tttgcttaat tcacattgaa aatatccagg
1021gggctcataa acatataaag gagaaacgac ataagaaaaa tattttggaa aaacaagaag
1081aaagtgagct tcgttctctg ccacctcctt cccctgccca cttggctgct ttaagtgttg
1141cagtcattga attagcaaaa gaacatggaa taacagatga tgacctcaga gtccgtcagg
1201aaattgtgga ggaaatgtca aaggttataa cgacattttt accagaatgt tcacttaggt
1261tgtatggctc atctctgact agatttgctc tgaaaagtag tgatgttaat atagatataa
1321aatttcctcc caagatgaat catccagatc ttctgataaa agtacttggg attttaaaga
1381aaaatgtatt atatgtagat gtggaatctg attttcacgc taaagttcct gttgtggtgt
1441gcagagatcg aaaaagtggt ttactttgta gagtgagtgc aggaaacgat atggcatgtc
1501tcactactga tttacttact gcccttggca aaatagaacc tgtctttatt cccttggtgt
1561tagcctttcg ctactgggct aagttgtgct atattgactc ccaaactgat ggtggaatcc
1621cttcttactg ttttgcttta atggtgatgt tttttctaca acagagaaaa ccccctcttc
1681ttccttgctt acttggaagt tggattgaag gctttgaccc aaaaagaatg gatgactttc
1741agctgaaggg catagtagaa gagaagtttg tgaagtggga atgtaattca agtagtgcaa
1801ctgagaaaaa ctcaattgct gaggaaaaca aagctaaggc agaccaacca aaagatgata
1861ccaagaagac agaaacagac aaccaaagta atgccatgaa ggaaaaacat ggcaaatctc
1921ctttagcatt ggaaacacca aatcgggtat ccttgggaca gttatggtta gagctgctta
1981aattctacac actggatttt gctttggagg aatatgtcat atgtgtacgg atacaagata
2041ttttaacaag agaaaataaa aactggccta aaaggcgaat agccattgaa gatccatttt
2101cagtcaagag gaatgttgca cggagcttaa acagccagct ggtttacgaa tatgttgtgg
2161agagatttag ggcagcttat cggtattttg cctgtcctca gacgaagggt ggaaataagt
2221ctacagtgga tttcaagaaa agagagaagg ggaaaataag caataagaaa ccagtcaagt
2281cgaacaatat ggcaaccaat ggttgtattc tgcttgggga aaccacagaa aaaataaatg
2341cagaaagaga gcaacctgtt caatgtgatg aaatggactg tacatcacag agatgtatta
2401ttgacaacaa caatttgttg gtaaatgaac tagattttgc tgaccacgga caggactctt
2461catctctttc taccagcaaa agcagtgaaa tagagccaaa attagataag aaacaagatg
2521atttagcgcc ttcagaaact tgtttaaaaa aagagctcag ccaatgtaat tgcattgatt
2581tgtctaagtc gcctgaccca gataaatcta ctggaacaga ctgcaggtca aatttagaaa
2641cagagagttc acatcagagt gtgtgcaccg acacatctgc tacctcttgc aactgcaaag
2701ctacagaaga tgcttctgac cttaatgatg atgataacct ccccacccag gaattatatt
2761atgtgtttga taagtttatt ttaacctctg gcaagccacc aacgatagta tgcagcatct
2821gcaaaaagga tggccattca aagaatgatt gcccagagga ttttaggaaa attgatttaa
2881aacctctacc accaatgaca aaccgatttc gggaaatact tgatttagta tgtaaaagat
2941gttttgatga gttatcacca ccttgttctg aacaacacaa cagggagcaa attttaattg
3001gcttggaaaa gtttattcaa aaagaatatg atgaaaaggc aaggttgtgc ttatttggct
3061cttctaagaa tggatttgga tttcgtgata gtgatctgga tatttgtatg accctggaag
3121gccatgaaaa tgcagagaaa ttaaattgta aggaaataat tgaaaatttg gcaaaaattc
3181ttaagagaca tccaggttta agaaacattt tgcctataac tactgccaaa gtgcctatag
3241taaaatttga acacaggcga agtgggttag aaggcgatat cagtttatat aatacgttgg
3301ctcaacataa cacaagaatg ctagctactt atgcagctat tgatcctaga gtgcagtatt
3361tgggatatac tatgaaagtg tttgctaagc gatgtgacat tggggatgct tccaggggaa
3421gtttatcttc atatgcatat atccttatgg tgctgtactt tctgcagcag agaaagccac
3481ctgttatccc agttctacaa gagatctttg atggaaaaca gattccacag agaatggttg
3541atggatggaa tgctttcttc tttgataaaa cagaagaact gaaaaagcgt ttaccttcac
3601ttggaaagaa cacagaatca ttaggggagc tttggctggg actgcttcgt ttctatactg
3661aagagtttga tttcaaggaa tatgtaatta gcattcggca gaaaaagctg ttgacaactt
3721ttgagaagca gtggacttcc aagtgcattg caattgaaga cccttttgac ttgaatcata
3781accttggtgc tggagtttcc agaaaaatga ccaatttcat catgaaagca tttatcaatg
3841gaaggaaact ttttggtacc cctttttatc cactcattgg cagagaagct gagtacttct
3901ttgattccag agtattaaca gatggagaac tggctcccaa tgatagatgt tgccgtgtgt
3961gtggaaaaat aggccactac atgaaagact gccctaaaag gaaaagcagt ttactgttta
4021gactaaagaa gaaagacagt gaagaagaga aggaagggaa tgaagaagag aaagattccc
4081gagatgttct tgacccccga gacctccacg atactcgaga ctttagagac ccgagagacc
4141tcagatgttt tatatgtgga gatgctggac atgtacgaag ggagtgccca gaggtcaagc
4201tggcccgtca gaggaatagc agtgtggcag cagcccagct ggtccgcaac cttgtaaatg
4261ctcaacaggt ggctggttca gctcagcaac agggtgatca gtccataagg actagacagt
4321catcagaatg ttctgaatca ccatcttatt ctcctcagcc tcagccattt ccacagaact
4381cttcccagtc agctgctatt actcagcctt catctcagcc aggatcccaa cctaagcttg
4441gcccacctca gcagggagcc caacctcccc atcaggtcca gatgccactg tataactttc
4501cccagtcacc accagctcag tattctccca tgcacaatat gggattgttg ccaatgcacc
4561ctctccagat ccctgccccg tcctggccca tccatggccc agtgatccac tctgcaccag
4621gcagtgcccc cagcaatatt ggcctaaatg atcccagcat catctttgca cagcctgctg
4681ccagacctgt ggcaatcccT AACACGTCTC ACGATGGACA CTGGCCCCGT ACTGTGGCTC
4741CAAATTCCCT GGTAAACAGT GGTGCAGTGG GGAATTCAGA GCCAGGCTTT CGAGGACTGA
4801CTCCTCCAAT TCCTTGGGAA CATGCACCGC GTCCCCATTT CCCCCTTGTC CCAGCTTCGT
4861GGCCTTATGG TTTGCATCAA AACTTCATGC ATCAGGGAAA TGCCCGATTC CAGCCCAACA
4921AACCTTTCTA TACTCAAGAC AGATGTGCCA CCCGTCGGTG TAGAGAGCGT TGTCCCCACC
4981CACCAAGAGG AAACGTGTCG GAGTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
5041AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
5101TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA TAGACGTCGA
5161ATAATTACGA CATACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
5221att

Download FASTA (ORF) (Full)