Construct: ORF TRCN0000469096

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001534.1_s317c1
Derived from:
ccsbBroadEn_07818
DNA Barcode:
TACAAGACCATCACGAGGCATGGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KIFAP3 (22920)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469096
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22920 KIFAP3 kinesin associated protein 3 NM_014970.4 99.9% 100% 1065T>C
2 human 22920 KIFAP3 kinesin associated protein 3 XM_024454186.1 97.8% 96.9% (many diffs)
3 human 22920 KIFAP3 kinesin associated protein 3 XM_005244970.2 97.1% 95.3% 1065T>C;2274_2310del;2382_2383ins31
4 human 22920 KIFAP3 kinesin associated protein 3 XM_011509307.3 96.8% 94% (many diffs)
5 human 22920 KIFAP3 kinesin associated protein 3 NM_001204517.1 94.9% 94.9% 0_1ins120;945T>C
6 human 22920 KIFAP3 kinesin associated protein 3 XM_024454187.1 94.7% 91.1% (many diffs)
7 human 22920 KIFAP3 kinesin associated protein 3 NM_001204516.1 94.4% 94.3% 32_33ins132;933T>C
8 human 22920 KIFAP3 kinesin associated protein 3 NM_001204514.1 89.1% 85.9% (many diffs)
9 mouse 16579 Kifap3 kinesin-associated protein 3 NM_001305643.1 88.8% 97.7% (many diffs)
10 mouse 16579 Kifap3 kinesin-associated protein 3 XM_006496679.3 85.9% 94.6% (many diffs)
11 mouse 16579 Kifap3 kinesin-associated protein 3 NM_010629.3 85.7% 93.9% (many diffs)
12 mouse 16579 Kifap3 kinesin-associated protein 3 XM_006496681.3 83% 90.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2442
ORF length:
2376
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca aggggaggac gccagatacc tcaaaaggaa agttaaagga gggaatatag
121atgtacatcc atcagaaaaa gcactcattg ttcactatga agtggaagct accattcttg
181gagaaatggg ggaccccatg ttgggagaac gaaaagaatg tcaaaaaatc attcgactta
241agagtctcaa tgccaacaca gatataactt ccctggcaag gaaggtggtt gaagaatgta
301aactcattca tccttcaaaa ctaaatgagg tagaacagct gttgtactat ctacagaacc
361gccgtgattc attgtcagga aaagagaaaa aagaaaaatc aagcaagcct aaagatccac
421ctccttttga aggaatggag attgatgaag ttgctaacat taatgacatg gatgaatata
481ttgagttatt atatgaagat attcctgaca aagttcgggg ttctgctttg atcctgcagc
541ttgctcgaaa tcctgataac ttggaagaac tactattgaa tgaaactgcc cttggtgcat
601tagcaagggt cctgagagaa gactggaagc aaagtgtcga gttagctaca aacataattt
661acatcttttt ttgtttctcc agcttttctc aatttcatgg acttattact cactataaaa
721ttggagctct gtgtatgaat attattgatc atgagttaaa aagacatgag ctttggcaag
781aagaactctc aaagaagaag aaagctgttg atgaagaccc tgaaaaccaa accttgagaa
841aggattatga aaaaaccttt aaaaagtacc aggggcttgt ggtaaaacag gaacagctat
901tacgagttgc tctttatttg cttctgaatc ttgctgagga tactcgtacc gaactgaaaa
961tgaggaacaa gaacatagtt cacatgttgg tgaaagccct tgatcgggac aattttgagc
1021tgctaatttt agttgtgtca ttcttgaaga aactcagcat ttttatggag aataaaaatg
1081atatggtgga aatggatatt gttgaaaaac tggtgaaaat gataccttgc gagcatgaag
1141acctgctgaa tatcaccctc cgacttttac taaacctatc ctttgacaca ggactgagga
1201ataagatggt acaagttgga ctgcttccca agctcactgc actcctaggc aatgacaact
1261acaaacaaat agcaatgtgt gttctttacc acataagcat ggatgaccgc tttaaatcaa
1321tgtttgcata cactgactgt ataccacagt taatgaagat gctgtttgaa tgttcagatg
1381aacgaattga cttggaactc atttctttct gcattaatct tgctgctaac aaaagaaatg
1441tacagcttat ctgtgaagga aatgggctga agatgctcat gaagagggct ctgaagttta
1501aggatccatt gctgatgaaa atgattagaa acatttctca gcatgatgga ccaactaaaa
1561atctgtttat tgattatgtt ggggaccttg cagcccagat ctctaatgat gaagaagagg
1621agtttgtgat tgaatgtttg ggaactcttg caaacttgac cattccagac ttagactggg
1681aattggttct taaagaatat aagttggttc catacctcaa ggataaacta aaaccaggtg
1741ctgcagaaga tgatcttgtt ttagaagtgg ttataatgat tggaactgta tccatggatg
1801actcttgtgc tgcattgcta gccaaatctg gcataatccc tgcactcatt gaattgctaa
1861atgctcaaca agaagatgat gaatttgtgt gtcagataat ttatgtcttc taccagatgg
1921ttttccacca agccacaaga gacgtcataa tcaaggaaac acaggctcca gcatatctca
1981tagacctaat gcatgataag aataatgaaa tccgaaaggt ctgtgataat acattagata
2041ttatagcgga atatgatgaa gaatgggcta agaaaattca gagtgaaaag tttcgctggc
2101ataactctca gtggctGGAG ATGGTAGAGA GTCGTCAGAT GGATGAGAGT GAGCAGTACT
2161TGTATGGTGA TGATCGAATT GAGCCATACA TTCATGAAGG AGATATTCTC GAAAGACCTG
2221ACCTTTTCTA CAACTCAGAT GGATTAATTG CCTCTGAAGG AGCCATAAGT CCCGATTTCT
2281TCAATGATTA CCACCTTCAA AATGGAGATG TTGTTGGGCA GCATTCATTT CCTGGCAGCC
2341TTGGAATGGA TGGCTTTGGC CAACCAGTTG GCATTCTTGG ACGCCCTGCC ACAGCATATG
2401GATTCCGCCC TGATGAACCT TACTACTATG GCTATGGATC TTGCCCAACT TTCTTGTACA
2461AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2521AATGAACTAG TCCGTAACTT GAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA
2581GGACGATACA AGACCATCAC GAGGCATGGC ACGCGTTAAG TCgacaatca acctctggat
2641tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)