Construct: ORF TRCN0000469124

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006415.1_s317c1
Derived from:
ccsbBroadEn_12716
DNA Barcode:
CGGGCATAGTATAGTCCTGTTATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GDPD5 (81544)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469124
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81544 GDPD5 glycerophosphodiester phosp... NM_001351168.1 92.9% 92.7% 0_1ins81;703G>A
2 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545286.1 92.6% 92.5% 0_1ins81;703G>A;932_934delCAG
3 human 81544 GDPD5 glycerophosphodiester phosp... NM_001351167.1 82.7% 82.6% 1_240del;1024G>A
4 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545281.2 82.6% 82.4% 1_240del;1024G>A;1253_1255delCAG
5 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545280.1 70.4% 70.3% 1_483del;1267G>A;1496_1498delCAG
6 human 81544 GDPD5 glycerophosphodiester phosp... NM_030792.8 63.9% 63.8% 1_654del;1438G>A
7 human 81544 GDPD5 glycerophosphodiester phosp... XM_006718697.3 63.9% 63.8% 1_654del;1438G>A
8 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545276.2 63.8% 63.6% 1_654del;1438G>A;1667_1669delCAG
9 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545277.2 63.8% 63.6% 1_654del;1438G>A;1667_1669delCAG
10 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545278.2 63.8% 63.6% 1_654del;1438G>A;1667_1669delCAG
11 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545279.2 63.8% 63.6% 1_654del;1438G>A;1667_1669delCAG
12 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507637.1 63.6% 66% (many diffs)
13 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507636.1 61% 63.4% (many diffs)
14 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507635.1 57.2% 59.4% (many diffs)
15 mouse 233552 Gdpd5 glycerophosphodiester phosp... NM_201352.2 55.8% 58.1% (many diffs)
16 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_017322181.1 55.8% 58.1% (many diffs)
17 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507632.1 55.3% 57.5% (many diffs)
18 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507633.1 55.3% 57.5% (many diffs)
19 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507634.1 55.3% 57.5% (many diffs)
20 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_011241738.1 55.3% 57.5% (many diffs)
21 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507639.1 14.7% 15.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1227
ORF length:
1161
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gaagaaagac ctcggcccca agcctgctct cattggccac cgcggggccc
121ccatgctggc tccagagcac acgctcatgt ccttccggaa ggccctcgag cagaagctgt
181acgggctcca ggctgacatt accatcagcc tggacggcgt gcccttcctc atgcatgaca
241ccaccctgcg gcgcaccacc aacgtggagg aggagttccc ggagctggcc cgcaggcctg
301cctccatgct taactggacc accctgcaga gactcaacgc tggccagtgg ttcctgaaga
361ctgacccctt ctggacagcc agctccctgt caccctccga ccacagagag gcccagaacc
421agtccatctg cagcctggca gagctcctgg agctggccaa gggcaatgcc acactgctgc
481tcaacctgcg tgacccgccc cgggagcacc cctaccgcag cagttttatc aacgtgactc
541tggaggccgt gctgcactcc ggcttccccc agcaccaggt catgtggctg cctagcaggc
601agaggcccct ggtgcggaag gtggctcccg gcttccaaca gacatcaggc tccaaggagg
661cagtcgccag cctgcggaga ggccacatcc agcggctgaa cctgcgctac actcaggtgt
721cccgccagga gctcagggac tacgcgtcct ggaacctgag tgtgaacctc tacacagtca
781acgcaccgtg gctcttctcc ctgctgtggt gtgcgggggt cccatccgtc acctctgaca
841actcccacac cctgtcccag gtgccttccc ccctctGGAT CATGCCCCCG GACGAGTACT
901GTCTCATGTG GGTCACTGCC GACCTGGTCT CCTTCACCCT CATCGTGGGC ATCTTCGTGC
961TCCAGAAGTG GCGCCTGGGT GGCATACGGA GCTACAACCC TGAGCAGATC ATGCTGAGTG
1021CTGCGGTGCG CCGGACCAGC CGGGACGTCA GCATCATGAA GGAGAAGCTT ATTTTCTCAG
1081AGATCAGCGA TGGTGTAGAG GTCTCCGATG TGCTCTCCGT ATGTTCAGAC AACAGTTATG
1141ACACATATGC CAACAGCACC GCCACCCCTG TGGGCCCCCG AGGGGGTGGC AGCCACACCA
1201AGACCCTCAT AGAGCGGAGT GGGCGTTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
1261GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1321AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACGGGCATA
1381GTATAGTCCT GTTATTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1441aagatt

Download FASTA (ORF) (Full)