Construct: ORF TRCN0000469141

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014315.1_s317c1
Derived from:
ccsbBroadEn_02109
DNA Barcode:
GGAAATACCGTCAGAAGCAGGCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
XPR1 (9213)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469141
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9213 XPR1 xenotropic and polytropic r... NM_001135669.2 100% 100%
2 human 9213 XPR1 xenotropic and polytropic r... NM_004736.4 90.6% 90.6% 1304_1498del
3 human 9213 XPR1 xenotropic and polytropic r... NM_001328662.2 75.2% 70.9% (many diffs)
4 human 9213 XPR1 xenotropic and polytropic r... NR_137330.2 20.7% 1_180del;1313_1314ins172;1902_8117del
5 mouse 19775 Xpr1 xenotropic and polytropic r... NM_011273.2 84% 87% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1959
ORF length:
1893
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gttcgccgag cacctctccg cgcacatcac tcccgagtgg aggaagcaat
121acatccagta tgaggctttc aaggatatgc tgtattcagc tcaggaccag gcaccttctg
181tggaagttac agatgaggac acagtaaaga ggtattttgc caagtttgaa gagaagtttt
241tccaaacctg tgaaaaagaa cttgccaaaa tcaacacatt ttattcagag aagctcgcag
301aggctcagcg caggtttgct acacttcaga atgagcttca gtcatcactg gatgcacaga
361aagaaagcac tggtgttact acgctgcgac aacgcagaaa gccagtcttc cacttgtccc
421atgaggaacg tgtccaacat agaaatatta aagaccttaa actggccttc agtgagttct
481acctcagtct aatcctgctg cagaactatc agaatctgaa ttttacaggg tttcgaaaaa
541tcctgaaaaa gcatgacaag atcctggaaa catctcgtgg agcagattgg cgagtggctc
601acgtagaggt ggccccattt tatacatgca agaaaatcaa ccagcttatc tctgaaactg
661aggctgtagt gaccaatgaa cttgaagatg gtgacagaca aaaggctatg aagcgtttac
721gtgtcccccc tttgggagct gctcagcctg caccagcatg gactactttt agagttggcc
781tattttgtgg aatattcatt gtactgaata ttacccttgt gcttgccgct gtatttaaac
841ttgaaacaga tagaagtata tggcccttga taagaatcta tcggggtggc tttcttctga
901ttgaattcct ttttctactg ggcatcaaca cgtatggttg gagacaggct ggagtaaacc
961atgtactcat ctttgaactt aatccgagaa gcaatttgtc tcatcaacat ctctttgaga
1021ttgctggatt cctcgggata ttgtggtgcc tgagccttct ggcatgcttc tttgctccaa
1081ttagtgtcat ccccacatat gtgtatccac ttgcccttta tggatttatg gttttcttcc
1141ttatcaaccc caccaaaact ttctactata aatcccggtt ttggctgctt aaactgctgt
1201ttcgagtatt tacagccccc ttccataagg taggctttgc tgatttctgg ctggcggatc
1261agctgaacag cctgtcagtg atactgatgg acctggaata tatgatctgc ttctacagtt
1321tggagctcaa atgggatgaa agtaagggcc tgttgccaaa taattcagaa gaacgaggtc
1381actcggacac tatggtgttc ttttacctgt ggattgtctt ttatatcatc agttcctgct
1441ataccctcat ctgggatctc aagatggact ggggtctctt cgataagaat gctggagaga
1501acactttccT CCGGGAAGAG ATTGTATACC CCCAAAAAGC CTACTACTAC TGTGCCATAA
1561TAGAGGATGT GATTCTGCGC TTTGCTTGGA CTATCCAAAT CTCGATTACC TCTACAACTT
1621TGTTGCCTCA TTCTGGGGAC ATCATTGCTA CTGTCTTTGC CCCACTTGAG GTTTTCCGGC
1681GATTTGTGTG GAACTTCTTC CGCCTGGAGA ATGAACATCT GAATAACTGT GGTGAATTCC
1741GTGCTGTGCG GGACATCTCT GTGGCCCCCC TGAACGCAGA TGATCAGACT CTCCTAGAAC
1801AGATGATGGA CCAGGATGAT GGGGTACGAA ACCGCCAGAA GAATCGGTCA TGGAAGTACA
1861ACCAGAGCAT ATCCCTGCGC CGGCCTCGCC TCGCTTCTCA ATCCAAGGCT CGTGACACTA
1921AGGTATTGAT AGAAGACACA GATGATGAAG CTAACACTTG CCCAACTTTC TTGTACAAAG
1981TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
2041GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
2101ACGAGGAAAT ACCGTCAGAA GCAGGCCCAC GCGTTAAGTC gacaatcaac ctctggatta
2161caaaatttgt gaaagatt

Download FASTA (ORF) (Full)