Construct: ORF TRCN0000469258
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013177.1_s317c1
- Derived from:
- ccsbBroadEn_10214
- DNA Barcode:
- CCCTGCAGGCCGTATCTATACCTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZCCHC7 (84186)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469258
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289119.1 | 99.8% | 99.8% | 1_3delATG |
| 2 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289120.1 | 99.8% | 99.8% | 1_3delATG |
| 3 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289121.1 | 99.8% | 99.8% | 1_3delATG |
| 4 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_032226.2 | 99.8% | 99.8% | 1_3delATG |
| 5 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_005251608.4 | 99.8% | 99.8% | 1_3delATG |
| 6 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_005251612.3 | 99.8% | 99.8% | 1_3delATG |
| 7 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_011518050.2 | 93.9% | 93.9% | 1_3delATG;987_988ins96 |
| 8 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015197.1 | 93.9% | 93.9% | 1_3delATG;987_988ins96 |
| 9 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015198.1 | 93.9% | 93.9% | 1_3delATG;987_988ins96 |
| 10 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015199.2 | 63.6% | 60.1% | 0_1ins547;58_59ins44 |
| 11 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015200.1 | 63.6% | 60.1% | 0_1ins547;58_59ins44 |
| 12 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_024447691.1 | 63.6% | 60.1% | 0_1ins547;58_59ins44 |
| 13 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_011518051.2 | 63.2% | 63% | (many diffs) |
| 14 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NR_110317.1 | 42.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1692
- ORF length:
- 1626
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtt tggtggctat gagactatag aagcatacga agatgatctt tatcgagatg 121 agtcatctag tgaactgagt gttgatagtg aggtggaatt tcaactctat agccaaattc 181 attatgccca agatcttgat gatgtcatca gggaggaaga gcatgaagaa aagaactctg 241 ggaattcgga atcttcgagt agtaaaccaa atcagaagaa gctaatcgtc ctttcagata 301 gtgaggtcat ccagctgtca gatgggtcag aggtcatcac tttgtctgat gaagacagta 361 tttatagatg taaaggaaag aatgttagag ttcaagcaca agaaaatgcc catggtcttt 421 cttcttctct tcaatctaat gagctggttg ataagaaatg caagagtgat attgagaagc 481 ctaaatctga agagagatca ggtgtaatcc gagaggtcat gattatagag gtcagttcaa 541 gtgaagagga agagagcacc atttcagaag gtgataatgt ggaaagctgg atgctactgg 601 gatgtgaagt agatgataaa gatgatgata tccttctcaa ccttgtggga tgtgaaaact 661 ctgttactga aggagaagat ggtataaact ggtccatcag tgacaaagac attgaggccc 721 agatagctaa taaccgaaca cctggaagat ggacccagcg gtactattca gccaacaaaa 781 acattatctg tagaaattgt gacaaacgtg gtcatttatc aaaaaactgc cccttaccac 841 gaaaagttcg tcgctgcttc ctgtgctcca ggagaggaca tctcctgtat tcctgtccag 901 cccccctttg cgaatactgt cctgtgccta agatgttgga ccactcatgt cttttcagac 961 attcctggga taaacagtgt gaccgatgtc atatgctagg ccactataca gatgcttgca 1021 cagaaatctg gaggcagtat cacctaacga ccaaacctgg accacccaaa aagccgaaga 1081 ccccttcaag accatcagcc ttagcatatt gctatcactg cgcgcaaaaa ggccattatg 1141 gacacgaatg tccagaaaga gaagtgtatg acccgtctcc agtatctcca ttcatctgct 1201 actatgatga caaatatgaa attcaggaga gagaaaagag actaaaacaa aaaataaaag 1261 tactcaagaa aaatggggtt atcccagagc caTCCAAGCT ACCTTATATA AAAGCAGCAA 1321 ATGAGAACCC CCACCATGAT ATAAGGAAGG GCCGTGCCTC ATGGAAAAGC AACAGGTGGC 1381 CTCAAGAAAA TAAAGAAACA CAAAAAGAAA TGAAGAACAA GAATAGAAAC TGGGAGAAGC 1441 ACAGGAAGGC TGACAGACAT CGTGAAGTGG ATGAGGATTT TCCCAGGGGC CCCAAAACCT 1501 ACTCTTCTCC TGGCAGTTTT AAAACCCAGA AGCCTTCTAA GCCCTTTCAC CGTTCATCAC 1561 ATTACCACAC GTCAAGAGAA GACAAGTCTC CCAAGGAAGG CAAGAGGGGC AAGCAGAAGA 1621 AAAAGGAGAG GTGCTGGGAA GATGATGACA ATGATAACTT ATTTCTTATT AAGCAGAGAA 1681 AAAAAAAGTC TTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 1741 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 1801 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACCC TGCAGGCCGT ATCTATACCT 1861 GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t