Construct: ORF TRCN0000469398

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009751.1_s317c1
Derived from:
ccsbBroadEn_05169
DNA Barcode:
ATGGCTGAAACGTTTTGAGTCATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLPP4 (196051)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469398
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 196051 PLPP4 phospholipid phosphatase 4 NM_001030059.2 100% 100%
2 human 196051 PLPP4 phospholipid phosphatase 4 XM_006717685.4 94.7% 92.9% (many diffs)
3 human 196051 PLPP4 phospholipid phosphatase 4 XM_011539444.3 93.9% 90.3% (many diffs)
4 human 196051 PLPP4 phospholipid phosphatase 4 XM_011539445.2 82.3% 76.7% (many diffs)
5 human 196051 PLPP4 phospholipid phosphatase 4 XM_006717686.4 80% 75.4% (many diffs)
6 human 196051 PLPP4 phospholipid phosphatase 4 XM_005269592.2 78.9% 78.5% 445_446ins171
7 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015820.1 77% 69.8% (many diffs)
8 human 196051 PLPP4 phospholipid phosphatase 4 NM_001318167.1 76.7% 76.3% 256_257ins189
9 human 196051 PLPP4 phospholipid phosphatase 4 NM_001318166.1 71.2% 43.6% 320_321ins125;579_580ins109
10 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015821.2 55.3% 55.3% 0_1ins363
11 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015822.1 55.3% 55.3% 0_1ins363
12 human 196051 PLPP4 phospholipid phosphatase 4 XM_024447860.1 55.3% 55.3% 0_1ins363
13 human 196051 PLPP4 phospholipid phosphatase 4 XM_024447861.1 55.3% 55.3% 0_1ins363
14 human 196051 PLPP4 phospholipid phosphatase 4 XM_024447862.1 55.3% 55.3% 0_1ins363
15 human 196051 PLPP4 phospholipid phosphatase 4 NR_134516.1 39.3% (many diffs)
16 human 196051 PLPP4 phospholipid phosphatase 4 NM_001318169.1 35.4% 25.1% 165_166ins451;288_289ins74
17 human 196051 PLPP4 phospholipid phosphatase 4 NM_001318168.1 35.4% 23.9% 164_165ins280;288_289ins245
18 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015823.1 35.4% 23.9% 164_165ins280;288_289ins245
19 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015824.2 35.4% 23.9% 164_165ins280;288_289ins245
20 mouse 381925 Plpp4 phospholipid phosphatase 4 NM_001080963.1 92.1% 99.2% (many diffs)
21 mouse 381925 Plpp4 phospholipid phosphatase 4 XM_017322323.1 91.8% 98.8% (many diffs)
22 mouse 381925 Plpp4 phospholipid phosphatase 4 XM_017322324.1 70.1% 76% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
882
ORF length:
813
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcgggagctg gccattgaga tcggggtgcg agccctgctc ttcggagtct
121tcgtttttac agagtttttg gatccgttcc agagagtcat ccagccagaa gagatctggc
181tctataaaaa tcctttggtg caatcagata acatacctac ccgcctcatg tttgcaattt
241ctttcctcac acccctggct gttatttgtg tggtgaaaat tatccggcga acagacaaga
301ctgaaattaa ggaagccttc ttagcggtgt ccttggctct tgctttgaat ggagtctgca
361caaacactat taaattaata gtgggaagac ctcgccccga tttcttttac cgctgctttc
421cagatggagt gatgaactcg gaaatgcatt gcacaggtga ccccgatctg gtgtccgagg
481gccgcaaaag cttccccagc atccattcct cctttgcctt ttcgggcctt GGCTTCACGA
541CGTTCTACTT GGCGGGCAAG CTGCACTGCT TCACCGAGAG TGGGCGGGGA AAGAGCTGGC
601GGCTCTGTGC TGCCATCCTG CCCTTGTACT GCGCCATGAT GATTGCCCTG TCCCGCATGT
661GCGACTACAA GCATCACTGG CAAGATTCCT TTGTGGGTGG AGTCATCGGC CTCATTTTTG
721CATACATTTG CTACAGACAG CACTATCCTC CTCTGGCCAA CACAGCTTGC CATAAACCCT
781ACGTTAGTCT GCGAGTCCCA GCCTCACTGA AGAAAGAGGA GAGGCCCACA GCTGACAGCG
841CACCCAGCTT GCCTCTGGAG GGGATCACCG AAGGCCCGGT ATTGCCAACT TTCTTGTACA
901AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
961AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
1021AGGACGAATG GCTGAAACGT TTTGAGTCAT TACGCGTTAA GTCgacaatc aacctctgga
1081ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)