Construct: ORF TRCN0000469478

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018253.1_s317c1
Derived from:
ccsbBroadEn_04057
DNA Barcode:
CGCTGCCAATCCTCCGATCTCTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZSCAN5A (79149)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469478
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322064.2 100% 100%
2 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322065.2 100% 100%
3 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322066.1 100% 100%
4 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322067.1 100% 100%
5 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322068.1 100% 100%
6 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322070.1 100% 100%
7 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322072.1 100% 100%
8 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_024303.2 100% 100%
9 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322073.2 99.7% 99.5% 739_740insCAG
10 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322074.2 99.7% 99.5% 739_740insCAG
11 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322075.1 99.7% 99.5% 739_740insCAG
12 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322076.1 99.7% 99.5% 739_740insCAG
13 human 649137 ZSCAN5C zinc finger and SCAN domain... NM_001358413.1 91% 83.6% (many diffs)
14 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322061.2 90.1% 89.9% 1_159del;898_899insCAG
15 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322062.1 90.1% 89.9% 1_159del;898_899insCAG
16 human 342933 ZSCAN5B zinc finger and SCAN domain... NM_001080456.2 89.2% 79% (many diffs)
17 human 342933 ZSCAN5B zinc finger and SCAN domain... XM_006723189.3 89.2% 79% (many diffs)
18 human 342933 ZSCAN5B zinc finger and SCAN domain... XM_005258864.3 80.6% 71.4% (many diffs)
19 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322077.2 75.8% 74.3% (many diffs)
20 human 79149 ZSCAN5A zinc finger and SCAN domain... NM_001322078.2 72.7% 70.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1554
ORF length:
1488
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tgcaaattgc acatcctcat ggagtctagg agaatcctgc aacagacctg
121ggttggagct gccacggtct atggcatcct cagaaactca acttggaaat cacgacgtgg
181accctgagat ttctcacgtg aacttcagga tgttcagctg cccgaaggag tcggacccca
241tccaggctct gaggaaactc actgagctgt gccatctgtg gctgaggccc gacctccaca
301ccaaagagca gatcctggac atgctggtga tggagcagtt catgatctcc atgccccagg
361agctccaggt cttagtcatg atgaacggtg tgcagagctg caaagacctg gaggacctgc
421tacgaaataa cagaagaccc aagaaatggt ctgtggtcac cttccacgga aaggaatata
481ttgtgcagga ctcagatatc gagatggctg aagccccctc cagtgtcaga gatgatctga
541aagacgtgtc cagccaacgg gcctcctcgg tgaaccagat gcgtccaggg gaaggccagg
601cccaccgaga gctgcagatc ctgcccaggg tccctgcatt gtccaggagg cagggagagg
661actttctgct acacaagagt attgacgtaa caggtgaccc aaagtctctg agacccaagc
721agaccttgga gaaggatctg aaggaaaaca gggaagagaa cccaggactg acatccccag
781agcctcagct tccaaagagt cccacagatc tggtgagagc aaaggagggg aaggaccccc
841caaaaatagc ctctgtggaa aatgtggatg ctgacacacc ttctgcctgc gttgtggaga
901gagaagcttc gactcacagc gggaacagag gagacgctct gaatctgagc agtcccaaaa
961gaagcaaacc agatgcctcc tccatttccc aagaagagcc tcaaggagaa gccacacctg
1021tgggcaacag agaatccccg ggacaagctg ggatgaattc aattcattcc ccaggccctg
1081cgagcccagt cagtcacccg gatggccaag aagccaaggc actgccgccc tttgcatgtg
1141acgtgtgcga gaagaggttt acgtgtaatt cCAAGCTAGT CATCCACAAG AGATCACACA
1201CAGGCGAGAG ACTCTTTCAA TGTAATCTCT GTGGGAAGCG CTTCATGCAG CTTATTAGCC
1261TCCAATTTCA CCAGCGAACC CACACTGGCG AGAGGCCCTA CACGTGTGAC GTCTGCCAGA
1321AGCAGTTCAC CCAGAAGTCC TACTTGAAGT GTCACAAGAG AAGCCACACA GGGGAGAAGC
1381CCTTCGAATG TAAAGACTGC AAGAAAGTTT TCACCTACAG GGGGAGCCTG AAGGAGCACC
1441AGCGCATCCA CTCCGGAGAG AAACCCTACA AATGTTCCAA GTGTCCAAGA GCCTTCAGTC
1501GGCTGAAATT GTTAAGACGC CACCAGAAAA CACATCCAGA AGCTACTTCT CAGTGCCCAA
1561CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1621ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1681TATCTTGTGG AAAGGACGAC GCTGCCAATC CTCCGATCTC TAGACGCGTT AAGTCgacaa
1741tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)