Construct: ORF TRCN0000469574
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018180.1_s317c1
- Derived from:
- ccsbBroadEn_12657
- DNA Barcode:
- ATCTAAATGTCAATTAGACAACCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC13 (80006)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469574
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80006 | TRAPPC13 | trafficking protein particl... | NM_024941.4 | 61.9% | 50.2% | 600_601insA;777_1251del |
| 2 | human | 80006 | TRAPPC13 | trafficking protein particl... | NM_001093755.1 | 61.8% | 50.1% | 600_601insA;777_1254del |
| 3 | human | 80006 | TRAPPC13 | trafficking protein particl... | NM_001093756.1 | 60.5% | 48.8% | 545_546insGAGTGACCTCAGTTCTGT;582_583insA;759_1233del |
| 4 | human | 80006 | TRAPPC13 | trafficking protein particl... | NM_001243737.1 | 60.3% | 48.7% | 545_546insGAGTGACCTCAGTTCTGT;582_583insA;759_1236del |
| 5 | human | 80006 | TRAPPC13 | trafficking protein particl... | NM_001365343.1 | 22.9% | 11.7% | (many diffs) |
| 6 | human | 80006 | TRAPPC13 | trafficking protein particl... | NM_001365342.1 | 22.8% | 11.7% | (many diffs) |
| 7 | mouse | 66975 | Trappc13 | trafficking protein particl... | NM_001093759.1 | 56.2% | 48.9% | (many diffs) |
| 8 | mouse | 66975 | Trappc13 | trafficking protein particl... | NM_025879.2 | 56% | 48.8% | (many diffs) |
| 9 | mouse | 66975 | Trappc13 | trafficking protein particl... | XM_006517737.3 | 54.7% | 47.5% | (many diffs) |
| 10 | mouse | 66975 | Trappc13 | trafficking protein particl... | NM_001093760.1 | 54.6% | 47.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 843
- ORF length:
- 777
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga agtgaatccc cctaaacagg agcacctgct ggcgctaaaa gtgatgcggc 121 tgactaagcc tactttattc accaatatcc cagtaacatg tgaagagaaa gacttacctg 181 gagatctctt taaccagctg atgagagatg atccttcaac cgttaatggt gcagaagttt 241 taatgttggg agaaatgctg actttaccac agaattttgg gaatatattt ttgggagaga 301 ccttttccag ttatatcagc gttcataatg atagcaatca agttGTAAAA GACATATTAG 361 TAAAAGCTGA TCTTCAGACA AGTTCTCAGC GTTTAAATCT TTCAGCCTCC AATGCTGCAG 421 TGGCTGAACT TAAACCGGAT TGTTGTATTG ATGATGTCAT ACATCATGAA GTCAAAGAAA 481 TTGGAACACA CATCTTGGTA TGTGCTGTGA GTTATACAAC TCAGGCTGGA GAAAAAATGT 541 ATTTCAGAAA ATTCTTCAAA TTTCAGGTTC TCAAACCATT GGATGTGAAA ACCAAATTTT 601 ACAATGCAGA GAGTGACCTC AGTTCTGTGA CTGATGAAGT ATTTCTGGAA GCCCAGATTC 661 AGAATAATGA CAACCTCACC TATGTTTATG GAGAAGGTTT CACTGGAGCC ATCTATTATG 721 TACAATGTAA CAGAATTAAA TTCAGTCAGC CAAGCTGGAG AATGTGTGTC TACGTTTGGG 781 TCAAGAGCAT ATTTGCAACC AATGGATACA CGCCAGTACT TATACTGCCT AAAGCCAAAG 841 AATGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 901 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 961 GGCTTTATAT ATCTTGTGGA AAGGACGAAT CTAAATGTCA ATTAGACAAC CGACGCGTTA 1021 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt