Construct: ORF TRCN0000469585

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006955.1_s317c1
Derived from:
ccsbBroadEn_00880
DNA Barcode:
GAGTATAACCTAGCCAACCTAAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IRF2 (3660)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469585
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3660 IRF2 interferon regulatory factor 2 NM_002199.4 100% 100%
2 human 3660 IRF2 interferon regulatory factor 2 XM_024454034.1 100% 100%
3 human 3660 IRF2 interferon regulatory factor 2 XM_024454035.1 100% 100%
4 human 3660 IRF2 interferon regulatory factor 2 XM_024454036.1 100% 100%
5 human 3660 IRF2 interferon regulatory factor 2 XM_024454037.1 99.4% 99.4% 526_527insTAGTTG
6 human 3660 IRF2 interferon regulatory factor 2 XM_024454038.1 99.4% 99.4% 526_527insTAGTTG
7 human 3660 IRF2 interferon regulatory factor 2 XM_024454039.1 84.2% 84.2% 362_363ins165
8 mouse 16363 Irf2 interferon regulatory factor 2 NM_008391.4 88.8% 92.5% (many diffs)
9 mouse 16363 Irf2 interferon regulatory factor 2 XM_006509288.3 88.8% 92.5% (many diffs)
10 mouse 16363 Irf2 interferon regulatory factor 2 XM_006509289.3 88.8% 92.5% (many diffs)
11 mouse 16363 Irf2 interferon regulatory factor 2 XM_017312580.1 83.7% 87.2% (many diffs)
12 mouse 16363 Irf2 interferon regulatory factor 2 XM_011242175.2 82.2% 85.6% (many diffs)
13 mouse 16363 Irf2 interferon regulatory factor 2 XR_001778407.1 31.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1113
ORF length:
1047
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc ggtggaaagg atgcgcatgc gcccgtggct ggaggagcag ataaactcca
121acacgatccc ggggctcaag tggcttaaca aggaaaagaa gatttttcag atcccctgga
181tgcatgcggc tagacatggg tgggatgtgg aaaaagatgc accactcttt agaaactggg
241caatccatac aggaaagcat caaccaggag tagataaacc tgatcccaaa acatggaagg
301cgaatttcag atgcgccatg aattccttgc ctgatattga agaagtcaag gataaaagca
361taaagaaagg aaataatgcc ttcagggtct accgaatgct gcccctatca gaacggcctt
421ctaagaaagg aaagaaacca aagacagaaa aagaagacaa agttaagcac atcaagcaag
481aaccagttga gtcatctctg gggcttagta atggagtaag tgatctttct cctgagtatg
541cggtcctgac ttcaactata aaaaatgaag tggatagtac ggtgaacatc atagttgtag
601gacagtccca tctggacagc aacattgaga atcaagagat tgtcaccaat ccgccagaca
661tttgccaagt tGTAGAGGTG ACCACTGAGA GCGACGAGCA GCCGGTCAGC ATGAGCGAGC
721TCTACCCTCT GCAGATCTCC CCCGTGTCTT CCTATGCAGA AAGCGAAACG ACTGATAGTG
781TGCCCAGCGA TGAAGAGAGT GCCGAGGGGC GGCCACACTG GCGGAAGAGG AATATTGAAG
841GCAAACAGTA CCTCAGCAAC ATGGGGACTC GAGGCTCCTA CCTGCTGCCC GGCATGGCGT
901CCTTCGTCAC TTCCAACAAA CCGGACCTCC AGGTCACCAT CAAAGAGGAG AGCAATCCGG
961TGCCTTACAA CAGCTCCTGG CCCCCTTTTC AAGACCTCCC CCTTTCTTCC TCCATGACCC
1021CAGCATCCAG CAGCAGTCGG CCAGACCGGG AGACCCGGGC CAGCGTCATC AAGAAAACAT
1081CGGATATCAC CCAGGCCCGC GTCAAGAGCT GTTACCCAAC TTTCTTGTAC AAAGTGGTTG
1141ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1201GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGA
1261GTATAACCTA GCCAACCTAA GCACGCGTTA AGTCgacaat caacctctgg attacaaaat
1321ttgtgaaaga tt

Download FASTA (ORF) (Full)